Input parameters:

  Query = FBpp0088520 (Len=617)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088520, Len=617):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTGQDVRLTDEDIALIKRIVSGRIPNKDHEEYE 80  
WD40-rpts                                                                                      

Query       81 PWIEWFTSEVEKMPIKNVPDHKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRR 160 
WD40-rpts                                                                                      

Query      161 IHDPVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKRKLHFMPQKFKSLREVPAYSRYLRERFLRCLDLYLC 240 
WD40-rpts                                                                                      

Query      241 PRAKRVKLNIDAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLVRSVSVEPKGEYLVSGSDDKTVKIWEIATGRCIRTIET 320 
WD40-rpts                                   (_________________WD 1________________)   (________

Query      321 DEVVRCVAWCPNPKLSIIAVATGNRLLLVNPKVGDKVLVKKTDDLLAEAPSQDVIESERIKTAVQWSNAEADEQEKGVRV 400 
WD40-rpts      _________WD 2________________)(________________WD 3________________)     (______

Query      401 VITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQLSKRRSQIPFSKSKGLIQFVLFHPVKPCFFVATQHNIRIYDLVK 480 
WD40-rpts      _____________WD 4__________________)   (________________WD 5________________)   

Query      481 QELVKKLLTNSKWISGMSIHPKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGSDDQAVIV 560 
WD40-rpts      (_________________WD 6________________)    (_________________WD 7_______________

Query      561 SHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLYT 617 
WD40-rpts      _)            (___________________WD 8__________________)

8 WD40-repeats found in QUERY=FBpp0088520 (Len=617):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   270-308      8.82  478.80  2.2e-05       45.0%     53.52
  WD 2:  Seg 10   312-350      4.61  305.20  0.00479       20.0%     53.94
  WD 3:  Seg 14   351-388      4.78  312.23  0.00385       10.0%     39.08
  WD 4:  Seg 18   394-436      6.66  389.84  0.00035       15.0%     52.09
  WD 5:  Seg 22   440-477      4.94  318.55  0.00317       15.0%     52.35
  WD 6:  Seg 26   481-519      7.51  424.89  0.00012       20.0%     58.15
  WD 7:  Seg 30   524-562      7.78  436.12  8.2e-05       27.5%     52.27
  WD 8:  Seg 34   575-617      5.59  345.45  0.00138       27.5%     45.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  270-308    -TVESMVYRGHTD----LVRSVSVEPKGEY-LVSGSDDK---TVKIWE
   WD 2  312-350    -GRCIRTIETD-E----VVRCVAWCPNPKLSIIAVATGN---RLLLVN
   WD 3  351-388    PKVGDKVLVKKTD----DL--LAEAPSQDV-IESERIKT---AVQWSN
   WD 4  394-436    QEKGVRVVITHFK----PIRQVTWHGRGDY-LATVMPEGANRSALIHQ
   WD 5  440-477    -RRSQIPFSKSKG----LIQFVLFHPVKPC-FFVAT-QH---NIRIYD
   WD 6  481-519    -QELVKKLLTNSK----WISGMSIHPKGDN-LLVSTYDK---KMLWFD
   WD 7  524-562    -TKPYQTMRLHRN----AVRSVAFHLRYPL-FASGSDDQ---AVIVSH
   WD 8  575-617    -IVPLKKLQTHEKRDEFGVLDVNWHPVQPW-VFSTGADS---TIRLYT

   WD40 Template    TGECLRTLSGHTS----GVTSVSFSPDGKR-LVSGSEDG---TIKVWD