Input parameters:

  Query = FBpp0088519 (Len=784)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088519, Len=784):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKKLALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQ 80  
WD40-rpts                                                                                      

Query       81 SSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPKRDSSKPEYQDSDTSDEEDIR 160 
WD40-rpts                                                                                      

Query      161 NTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTGQDVRLTDEDIALIKRIVSGRIPN 240 
WD40-rpts                                                                                      

Query      241 KDHEEYEPWIEWFTSEVEKMPIKNVPDHKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDT 320 
WD40-rpts                                                                                      

Query      321 SREHMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKRKLHFMPQKFKSLREVPAYSRYLRERFLR 400 
WD40-rpts                                                                                      

Query      401 CLDLYLCPRAKRVKLNIDAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLVRSVSVEPKGEYLVSGSDDKTVKIWEIATGR 480 
WD40-rpts                                          (_________________WD 1________________)   (_

Query      481 CIRTIETDEVVRCVAWCPNPKLSIIAVATGNRLLLVNPKVGDKVLVKKTDDLLAEAPSQDVIESERIKTAVQWSNAEADE 560 
WD40-rpts      ________________WD 2________________)(________________WD 3________________)(____

Query      561 QEKGVRVVITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQLSKRRSQIPFSKSKGLIQFVLFHPVKPCFFVATQHNI 640 
WD40-rpts      ________________WD 4___________________)      (________________WD 5_____________

Query      641 RIYDLVKQELVKKLLTNSKWISGMSIHPKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGS 720 
WD40-rpts      ___)   (_________________WD 6________________)    (_________________WD 7________

Query      721 DDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLYT 784 
WD40-rpts      ________)            (___________________WD 8__________________)

8 WD40-repeats found in QUERY=FBpp0088519 (Len=784):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   437-475      8.26  456.00  4.4e-05       45.0%     53.67
  WD 2:  Seg 11   479-517      3.67  266.22  0.01598       20.0%     53.87
  WD 3:  Seg 15   518-555      3.42  256.08  0.02182       10.0%     33.89
  WD 4:  Seg 18   556-600      4.09  283.63  0.00934       15.0%     48.92
  WD 5:  Seg 22   607-644      3.73  268.82  0.01475       15.0%     50.36
  WD 6:  Seg 26   648-686      6.63  388.63  0.00036       20.0%     58.04
  WD 7:  Seg 30   691-729      7.07  406.60  0.00021       27.5%     51.43
  WD 8:  Seg 33   742-784      4.62  305.64  0.00473       27.5%     41.32

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  437-475    -T-----VESMVYRGHTD----LVRSVSVEPKGEY-LVSGSDDKTVKIWE
   WD 2  479-517    -G-----RCIRTIETD-E----VVRCVAWCPNPKLSIIAVATGNRLLLVN
   WD 3  518-555    PK-----VGDKVLVKKTD----DL--LAEAPSQDV-IESERIKTAVQWSN
   WD 4  556-600    AEADEQEKGVRVVITHFK----PIRQVTWHGRGDY-LATVMPEGANRSAL
   WD 5  607-644    -R-----RSQIPFSKSKG----LIQFVLFHPVKPC-FFVAT-QHNIRIYD
   WD 6  648-686    -Q-----ELVKKLLTNSK----WISGMSIHPKGDN-LLVSTYDKKMLWFD
   WD 7  691-729    -T-----KPYQTMRLHRN----AVRSVAFHLRYPL-FASGSDDQAVIVSH
   WD 8  742-784    -I-----VPLKKLQTHEKRDEFGVLDVNWHPVQPW-VFSTGADSTIRLYT

   WD40 Template    TG-----ECLRTLSGHTS----GVTSVSFSPDGKR-LVSGSEDGTIKVWD