Input parameters:

  Query = FBpp0088429 (Len=653)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088429, Len=653):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDGYMEDWWRPRKAHATDY 160 
WD40-rpts                                                                                      

Query      161 YDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMI 240 
WD40-rpts                                                                                      

Query      241 ILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVV 320 
WD40-rpts                                                               (___________________WD 

Query      321 GSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLS 400 
WD40-rpts      1___________________)(___________________WD 2___________________)           (___

Query      401 AAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYV 480 
WD40-rpts      ______________WD 3________________)(______________________WD 4__________________

Query      481 YSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVH 560 
WD40-rpts      ___)     (____________________WD 5___________________)   (_________________WD 6_

Query      561 PALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNT 640 
WD40-rpts      ________________)(____________________WD 7___________________)                  

Query      641 HLSEIKMNQSDEV 653 
WD40-rpts                   

7 WD40-repeats found in QUERY=FBpp0088429 (Len=653):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   298-341      3.46  257.43  0.02094       27.5%     43.40
  WD 2:  Seg  7   342-385      3.91  276.37  0.01168       27.5%     39.76
  WD 3:  Seg 12   397-435      5.53  342.91  0.00149       22.5%     45.42
  WD 4:  Seg 15   436-484      3.74  269.30  0.01453       27.5%     47.72
  WD 5:  Seg 19   490-534      5.39  337.42  0.00176       25.0%     40.69
  WD 6:  Seg 22   538-577      5.16  327.94  0.00237       20.0%     52.89
  WD 7:  Seg 26   578-622      5.45  339.83  0.00164       22.5%     58.37

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  298-341    -------------------ERWS---KNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  342-385    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  397-435    TP----------------LSAAA---HTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  436-484    LDM-----LSQPQDTLELQQRQS---KAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  490-534    -SG-----V--------NEVYER---HLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  538-577    -TK-----P--------LYSFED---NSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  578-622    LNQDTEVPT--------ASIVVA---GAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSG---HTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD