Input parameters:

  Query = FBpp0088428 (Len=663)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088428, Len=663):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWW 160 
WD40-rpts                                                                                      

Query      161 RPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVN 240 
WD40-rpts                                                                                      

Query      241 ELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMD 320 
WD40-rpts                                                                         (____________

Query      321 WSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQK 400 
WD40-rpts      _______WD 1___________________)     (_________________WD 2________________)     

Query      401 RTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINS 480 
WD40-rpts            (_________________WD 3________________)(______________________WD 4________

Query      481 LVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDY 560 
WD40-rpts      _____________)     (____________________WD 5___________________)   (____________

Query      561 VMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQP 640 
WD40-rpts      _____WD 6_________________)(____________________WD 7___________________)        

Query      641 SRDEWSRFNTHLSEIKMNQSDEV 663 
WD40-rpts                             

7 WD40-repeats found in QUERY=FBpp0088428 (Len=663):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   308-351      3.18  245.96  0.02976       27.5%     42.66
  WD 2:  Seg  7   357-395      3.88  274.92  0.01222       12.5%     52.60
  WD 3:  Seg 12   407-445      5.33  334.82  0.00191       22.5%     44.77
  WD 4:  Seg 15   446-494      3.48  258.35  0.02036       27.5%     47.38
  WD 5:  Seg 19   500-544      5.20  329.64  0.00225       25.0%     40.98
  WD 6:  Seg 22   548-587      4.89  316.83  0.00334       20.0%     51.78
  WD 7:  Seg 26   588-632      5.20  329.28  0.00227       22.5%     58.28

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  308-351    -------------------ERWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  357-395    -ST-----P--------EDVFHCQSAVMSTCFA--KF-N------PNLI-LGGT----------YSGQIVLWD
   WD 3  407-445    TP----------------LSAAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  446-494    LDM-----LSQPQDTLELQQRQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  500-544    -SG-----V--------NEVYERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  548-587    -TK-----P--------LYSFEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  588-632    LNQDTEVPT--------ASIVVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD