Input parameters:

  Query = FBpp0088427 (Len=627)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088427, Len=627):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQN 160 
WD40-rpts                                                                                      

Query      161 LGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVD 240 
WD40-rpts                                                                                      

Query      241 IYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKK 320 
WD40-rpts                                     (___________________WD 1___________________)(____

Query      321 STPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISIS 400 
WD40-rpts      _______________WD 2___________________)           (_________________WD 3________

Query      401 SDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGI 480 
WD40-rpts      ________)(______________________WD 4_____________________)     (________________

Query      481 STHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPT 560 
WD40-rpts      ____WD 5___________________)   (_________________WD 6_________________)(________

Query      561 ASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 627 
WD40-rpts      ____________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0088427 (Len=627):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   272-315      3.31  251.52  0.02510       27.5%     42.57
  WD 2:  Seg  6   316-359      4.18  287.17  0.00837       27.5%     43.22
  WD 3:  Seg 11   371-409      5.39  337.25  0.00177       22.5%     43.84
  WD 4:  Seg 14   410-458      3.56  261.82  0.01830       27.5%     46.57
  WD 5:  Seg 18   464-508      5.28  332.62  0.00205       25.0%     41.46
  WD 6:  Seg 21   512-551      4.87  315.85  0.00344       20.0%     51.38
  WD 7:  Seg 25   552-596      5.29  333.26  0.00201       22.5%     57.76

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  272-315    -------------------E---RWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  316-359    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  371-409    TP----------------LS---AAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  410-458    LDM-----LSQPQDTLELQQ---RQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  464-508    -SG-----V--------NEV---YERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  512-551    -TK-----P--------LYS---FEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  552-596    LNQDTEVPT--------ASI---VVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD