Input parameters:

  Query = FBpp0088426 (Len=635)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088426, Len=635):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDDEYNLNPGLEWEDEFTD 160 
WD40-rpts                                                                                      

Query      161 DEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIE 240 
WD40-rpts                                                                                      

Query      241 RALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVM 320 
WD40-rpts                                            (____________________WD 1_________________

Query      321 VWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQN 400 
WD40-rpts      __)     (_________________WD 2________________)           (_________________WD 3

Query      401 AHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYER 480 
WD40-rpts      ________________)(______________________WD 4_____________________)     (________

Query      481 HLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNL 560 
WD40-rpts      ____________WD 5___________________)   (_________________WD 6_________________)(

Query      561 NQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 635 
WD40-rpts      ____________________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0088426 (Len=635):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   279-323      3.47  257.93  0.02062       27.5%     42.81
  WD 2:  Seg  7   329-367      4.11  284.40  0.00912       12.5%     51.07
  WD 3:  Seg 12   379-417      5.59  345.52  0.00137       22.5%     44.63
  WD 4:  Seg 15   418-466      3.70  267.68  0.01527       27.5%     46.75
  WD 5:  Seg 19   472-516      5.35  335.68  0.00186       25.0%     40.96
  WD 6:  Seg 22   520-559      4.91  317.67  0.00325       20.0%     52.11
  WD 7:  Seg 26   560-604      5.46  340.40  0.00161       22.5%     58.02

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  279-323    ------------------DERWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  329-367    -ST-----P--------EDVFHCQSAVMSTCFA--KF-N------PNLI-LGGT----------YSGQIVLWD
   WD 3  379-417    TP----------------LSAAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  418-466    LDM-----LSQPQDTLELQQRQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  472-516    -SG-----V--------NEVYERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  520-559    -TK-----P--------LYSFEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  560-604    LNQDTEVPT--------ASIVVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD