Input parameters:

  Query = FBpp0088425 (Len=636)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088425, Len=636):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDDEYNLNPGLEWEDEFTG 160 
WD40-rpts                                                                                      

Query      161 DDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVI 240 
WD40-rpts                                                                                      

Query      241 ERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVV 320 
WD40-rpts                                             (____________________WD 1________________

Query      321 MVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQ 400 
WD40-rpts      ___)(___________________WD 2___________________)           (_________________WD 

Query      401 NAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYE 480 
WD40-rpts      3________________)(______________________WD 4_____________________)     (_______

Query      481 RHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWN 560 
WD40-rpts      _____________WD 5___________________)   (_________________WD 6_________________)

Query      561 LNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 636 
WD40-rpts      (____________________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0088425 (Len=636):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   280-324      3.25  249.02  0.02710       27.5%     42.27
  WD 2:  Seg  7   325-368      3.80  271.54  0.01356       27.5%     39.76
  WD 3:  Seg 12   380-418      5.35  335.70  0.00186       22.5%     44.60
  WD 4:  Seg 15   419-467      3.52  260.06  0.01931       27.5%     48.67
  WD 5:  Seg 19   473-517      5.18  328.62  0.00232       25.0%     40.64
  WD 6:  Seg 22   521-560      4.89  316.83  0.00334       20.0%     53.35
  WD 7:  Seg 26   561-605      5.30  333.42  0.00200       22.5%     57.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  280-324    ------------------DERWS---KNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  325-368    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  380-418    TP----------------LSAAA---HTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  419-467    LDM-----LSQPQDTLELQQRQS---KAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  473-517    -SG-----V--------NEVYER---HLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  521-560    -TK-----P--------LYSFED---NSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  561-605    LNQDTEVPT--------ASIVVA---GAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSG---HTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD