Input parameters:

  Query = FBpp0088424 (Len=650)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088424, Len=650):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDEYNLNPGLE 160 
WD40-rpts                                                                                      

Query      161 WEDEFTVLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILS 240 
WD40-rpts                                                                                      

Query      241 ENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSY 320 
WD40-rpts                                                           (____________________WD 1__

Query      321 HNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAA 400 
WD40-rpts      _________________)(___________________WD 2___________________)           (______

Query      401 HTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSA 480 
WD40-rpts      ___________WD 3________________)(______________________WD 4_____________________

Query      481 SRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPAL 560 
WD40-rpts      )     (____________________WD 5___________________)   (_________________WD 6____

Query      561 FAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLS 640 
WD40-rpts      _____________)(____________________WD 7___________________)                     

Query      641 EIKMNQSDEV 650 
WD40-rpts                

7 WD40-repeats found in QUERY=FBpp0088424 (Len=650):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   294-338      3.70  267.69  0.01527       27.5%     42.22
  WD 2:  Seg  6   339-382      4.19  287.65  0.00825       27.5%     42.75
  WD 3:  Seg 11   394-432      5.55  343.79  0.00145       22.5%     44.57
  WD 4:  Seg 14   433-481      3.81  272.09  0.01333       27.5%     47.56
  WD 5:  Seg 18   487-531      5.39  337.18  0.00178       25.0%     41.19
  WD 6:  Seg 21   535-574      5.20  329.67  0.00224       20.0%     53.14
  WD 7:  Seg 25   575-619      5.43  338.92  0.00168       22.5%     57.98

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  294-338    ------------------DE---RWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  339-382    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  394-432    TP----------------LS---AAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  433-481    LDM-----LSQPQDTLELQQ---RQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  487-531    -SG-----V--------NEV---YERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  535-574    -TK-----P--------LYS---FEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  575-619    LNQDTEVPT--------ASI---VVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD