Input parameters:

  Query = FBpp0088423 (Len=642)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088423, Len=642):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDEYNLNPGLE 160 
WD40-rpts                                                                                      

Query      161 WEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVV 240 
WD40-rpts                                                                                      

Query      241 RAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPN 320 
WD40-rpts                                                    (___________________WD 1__________

Query      321 EPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCL 400 
WD40-rpts      _________)(___________________WD 2___________________)           (______________

Query      401 QMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSG 480 
WD40-rpts      ___WD 3________________)(______________________WD 4_____________________)     (_

Query      481 VNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSG 560 
WD40-rpts      ___________________WD 5___________________)   (_________________WD 6____________

Query      561 RLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 640 
WD40-rpts      _____)(____________________WD 7___________________)                             

Query      641 EV 642 
WD40-rpts        

7 WD40-repeats found in QUERY=FBpp0088423 (Len=642):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   287-330      3.43  256.39  0.02162       27.5%     42.68
  WD 2:  Seg  7   331-374      3.98  279.09  0.01074       27.5%     43.13
  WD 3:  Seg 12   386-424      5.48  340.97  0.00158       22.5%     44.15
  WD 4:  Seg 15   425-473      3.66  265.82  0.01618       27.5%     46.38
  WD 5:  Seg 19   479-523      5.31  334.09  0.00196       25.0%     41.27
  WD 6:  Seg 22   527-566      5.11  325.75  0.00253       20.0%     51.75
  WD 7:  Seg 26   567-611      5.36  336.07  0.00184       22.5%     58.06

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  287-330    -------------------E---RWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  331-374    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  386-424    TP----------------LS---AAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  425-473    LDM-----LSQPQDTLELQQ---RQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  479-523    -SG-----V--------NEV---YERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  527-566    -TK-----P--------LYS---FEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  567-611    LNQDTEVPT--------ASI---VVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD