Input parameters:

  Query = FBpp0088422 (Len=643)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088422, Len=643):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDEYNLNPGLE 160 
WD40-rpts                                                                                      

Query      161 WEDEFTGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFV 240 
WD40-rpts                                                                                      

Query      241 VRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESP 320 
WD40-rpts                                                    (____________________WD 1_________

Query      321 NEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYC 400 
WD40-rpts      __________)(___________________WD 2___________________)           (_____________

Query      401 LQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRS 480 
WD40-rpts      ____WD 3________________)(______________________WD 4_____________________)     (

Query      481 GVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGS 560 
WD40-rpts      ____________________WD 5___________________)   (_________________WD 6___________

Query      561 GRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQS 640 
WD40-rpts      ______)(____________________WD 7___________________)                            

Query      641 DEV 643 
WD40-rpts         

7 WD40-repeats found in QUERY=FBpp0088422 (Len=643):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   287-331      3.42  255.78  0.02203       27.5%     42.86
  WD 2:  Seg  7   332-375      3.93  277.19  0.01139       27.5%     38.25
  WD 3:  Seg 12   387-425      5.54  343.67  0.00145       22.5%     44.53
  WD 4:  Seg 15   426-474      3.73  268.65  0.01482       27.5%     46.95
  WD 5:  Seg 19   480-524      5.38  336.94  0.00179       25.0%     41.34
  WD 6:  Seg 22   528-567      5.07  324.01  0.00267       20.0%     53.15
  WD 7:  Seg 26   568-612      5.43  338.84  0.00169       22.5%     57.99

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  287-331    ------------------DERWS---KNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  332-375    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  387-425    TP----------------LSAAA---HTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  426-474    LDM-----LSQPQDTLELQQRQS---KAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  480-524    -SG-----V--------NEVYER---HLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  528-567    -TK-----P--------LYSFED---NSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  568-612    LNQDTEVPT--------ASIVVA---GAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSG---HTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD