Input parameters:

  Query = FBpp0088421 (Len=626)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088421, Len=626):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDDEESSLQNL 160 
WD40-rpts                                                                                      

Query      161 GNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDI 240 
WD40-rpts                                                                                      

Query      241 YTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKS 320 
WD40-rpts                                    (___________________WD 1___________________)(_____

Query      321 TPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISS 400 
WD40-rpts      ______________WD 2___________________)           (_________________WD 3_________

Query      401 DGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGIS 480 
WD40-rpts      _______)(______________________WD 4_____________________)     (_________________

Query      481 THYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTA 560 
WD40-rpts      ___WD 5___________________)   (_________________WD 6_________________)(_________

Query      561 SIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 626 
WD40-rpts      ___________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0088421 (Len=626):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   271-314      3.40  255.05  0.02253       27.5%     42.65
  WD 2:  Seg  6   315-358      4.16  286.55  0.00853       27.5%     42.22
  WD 3:  Seg 11   370-408      5.42  338.52  0.00170       22.5%     44.53
  WD 4:  Seg 14   409-457      3.71  267.83  0.01521       27.5%     46.83
  WD 5:  Seg 18   463-507      5.32  334.51  0.00193       25.0%     41.54
  WD 6:  Seg 21   511-550      5.02  321.89  0.00286       20.0%     51.68
  WD 7:  Seg 25   551-595      5.37  336.64  0.00181       22.5%     57.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  271-314    -------------------E---RWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  315-358    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  370-408    TP----------------LS---AAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  409-457    LDM-----LSQPQDTLELQQ---RQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  463-507    -SG-----V--------NEV---YERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  511-550    -TK-----P--------LYS---FEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  551-595    LNQDTEVPT--------ASI---VVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD