Input parameters:

  Query = FBpp0088420 (Len=627)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088420, Len=627):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYGDDEESSLQN 160 
WD40-rpts                                                                                      

Query      161 LGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVD 240 
WD40-rpts                                                                                      

Query      241 IYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKK 320 
WD40-rpts                                    (____________________WD 1___________________)(____

Query      321 STPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISIS 400 
WD40-rpts      _______________WD 2___________________)           (_________________WD 3________

Query      401 SDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGI 480 
WD40-rpts      ________)(______________________WD 4_____________________)     (________________

Query      481 STHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPT 560 
WD40-rpts      ____WD 5___________________)   (_________________WD 6_________________)(________

Query      561 ASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 627 
WD40-rpts      ____________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0088420 (Len=627):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   271-315      3.55  261.49  0.01848       27.5%     43.06
  WD 2:  Seg  5   316-359      4.29  291.69  0.00728       27.5%     43.53
  WD 3:  Seg 10   371-409      5.54  343.60  0.00146       22.5%     44.22
  WD 4:  Seg 13   410-458      3.72  268.25  0.01501       27.5%     46.90
  WD 5:  Seg 17   464-508      5.39  337.35  0.00177       25.0%     41.92
  WD 6:  Seg 20   512-551      5.03  322.33  0.00282       20.0%     51.91
  WD 7:  Seg 24   552-596      5.40  337.56  0.00176       22.5%     57.76

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  271-315    ------------------DE---RWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  316-359    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  371-409    TP----------------LS---AAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  410-458    LDM-----LSQPQDTLELQQ---RQSKAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  464-508    -SG-----V--------NEV---YERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  512-551    -TK-----P--------LYS---FEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  552-596    LNQDTEVPT--------ASI---VVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD