Input parameters:

  Query = FBpp0088419 (Len=634)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088419, Len=634):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMT 80  
WD40-rpts                                                                                      

Query       81 SDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYVLAFDAQGDD 160 
WD40-rpts                                                                                      

Query      161 EESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIER 240 
WD40-rpts                                                                                      

Query      241 ALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMV 320 
WD40-rpts                                           (____________________WD 1__________________

Query      321 WNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNA 400 
WD40-rpts      _)(___________________WD 2___________________)           (_________________WD 3_

Query      401 HNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERH 480 
WD40-rpts      _______________)(______________________WD 4_____________________)     (_________

Query      481 LGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLN 560 
WD40-rpts      ___________WD 5___________________)   (_________________WD 6_________________)(_

Query      561 QDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 634 
WD40-rpts      ___________________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0088419 (Len=634):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   278-322      3.53  260.41  0.01910       27.5%     42.38
  WD 2:  Seg  6   323-366      4.24  289.65  0.00775       27.5%     37.81
  WD 3:  Seg 11   378-416      5.51  342.25  0.00152       22.5%     44.60
  WD 4:  Seg 14   417-465      3.75  269.49  0.01445       27.5%     46.54
  WD 5:  Seg 18   471-515      5.36  335.90  0.00185       25.0%     41.08
  WD 6:  Seg 21   519-558      5.04  322.78  0.00278       20.0%     52.78
  WD 7:  Seg 25   559-603      5.45  339.76  0.00164       22.5%     57.82

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  278-322    ------------------DERWS---KNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  323-366    TKF-----K--------KSTPEDVFHCQSAVMSTCF--AKFN------PNLI-LGGT----------YSGQIVLWD
   WD 3  378-416    TP----------------LSAAA---HTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  417-465    LDM-----LSQPQDTLELQQRQS---KAIAITSMAF--PANE------INSL-VMGS----------EDGYVYSAS
   WD 5  471-515    -SG-----V--------NEVYER---HLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  519-558    -TK-----P--------LYSFED---NSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  559-603    LNQDTEVPT--------ASIVVA---GAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSG---HTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD