Input parameters:

  Query = FBpp0088071 (Len=710)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088071, Len=710):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSKELCSIREWAPLTEVIERIPARLQRGFFPANLNLTCVDATEEFLAMGSDAGIVFWYNRHTGEMQKLKAEVATRITC 80  
WD40-rpts                                  (______________WD 1_____________)   (_______________

Query       81 VRVVNSVEYMVAAGCANGQVSIFQIQKELPRDLDLVAPCTKSRPIERYTIRDLHKCVVSCCEWSKNGMKLYSGDRQGVVV 160 
WD40-rpts      __WD 2_________________) (__________________________WD 3________________________

Query      161 LTELDYQAHLSKSVEILSEAYEIVQLSVRQSYLLVATLYRCIVCQMDAQTSQWNITQVGKKDRKQLIDCGAIFLKKQEAN 240 
WD40-rpts      __)                                                                             

Query      241 KPQLVCGRPGLRFWVADAAGNVSKTVIFRDAVLRSPTWEIPILNPKQRSEPSGTHHTSASTSSTRHSGLADGDVGYVASS 320 
WD40-rpts                                                                                      

Query      321 NFRQLYLYDGHDSLLVTHDDATLYVLNLDRLKVEAVARGLRKILDFCVCGKEIFVLEGNRTLLRLAPLPEPPNKTAKVIF 400 
WD40-rpts                                                                                      

Query      401 NPLMPPPVPVLGSHLSQLESPIELQAEPVLQNAEECFELSPVEQLNLNVPIEIAVESPLTQQNRRLEIFRRIGEMDFEQS 480 
WD40-rpts                                                                                      

Query      481 IVHTTRKTSVGKPPEASGVGIVEIGHETHELRLPLTNAATLMEASYCQMENNGLASPLDMKAAFLQHLPDALSPTTLQKT 560 
WD40-rpts                                                                                      

Query      561 VAEKAKTLAAELDLPEVHLAPLSQEELHAVQAQTPQISDPLIRCYPTHLEEASIQTSSRENATNPADDYHVGEPVDGIRS 640 
WD40-rpts                                                                                      

Query      641 FGVSKRKMAPLKFVLSQPKPTLKLEENRDDEEYTSFLPDFRRAGDPLAIHKETPATSDSNTSSEWEFLDN 710 
WD40-rpts                                                                            

3 WD40-repeats found in QUERY=FBpp0088071 (Len=710):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    29-61       3.53  260.41  0.01910       12.5%     43.06
  WD 2:  Seg  4    65-104      4.39  295.87  0.00639       15.0%     51.27
  WD 3:  Seg  8   106-163      5.11  325.56  0.00255       27.5%     38.12

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-61     RG-------------------------FFPANLNLTCV-DATEEFLAMGSDAGIVFWYN
   WD 2   65-104    -GEMQKLK------------------AEVATRITCVRVVNSVEYMVAAGCANGQVSIFQ
   WD 3  106-163    QKELPRDLDLVAPCTKSRPIERYTIRDLHKCVVSCCEW-SKNGMKLYSGDRQGVVVLTE

   WD40 Template    TGECLRTL------------------SGHTSGVTSVSF-SPDGKRLVSGSEDGTIKVWD