Input parameters:

  Query = FBpp0087994 (Len=327)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087994, Len=327):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIVIRFLQSIAPVFLAHGIVGIIAFCVRLYMQGGKFRKQTDETGKVAIVTGGNTGLGKETVMELARRGATVYMACRNKE 80  
WD40-rpts                                      (_______________________________WD 1____________

Query       81 KVERARREIVKETGNSNVFSRECDLSSLDSIRKFAENFKKEQRVLHILINNAGVFWEPHRLTKEGFEMHLGVNHIGHFLL 160 
WD40-rpts      ___________________)                                                            

Query      161 TNLLLGVLERSAPSRVVVVASRAHERGQIKVDDINSSDFYDEGVAYCQSKLANILFTRELAKRLEGTGVTVNALNPGIAD 240 
WD40-rpts                                                                                      

Query      241 TEIARNMIFFQTKFAQTILRPLLWAVMKTPKNGAQTTLYAALDPDLERVSGQYFSDCALAPVAPAALDDQMAQWLWAQSE 320 
WD40-rpts                                                                                      

Query      321 KWAKIAL 327 
WD40-rpts             

1 WD40-repeats found in QUERY=FBpp0087994 (Len=327):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    33-100      2.88  233.70  0.04325       20.0%     35.21

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-100    QGGKFRKQTDETGKVAIVTGGNTGLGKETVMELARRGATVYMACRNKEKVERARREIVKETGNSNVFS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-------------GKRLVSGSED---------------GTIKVWD