Input parameters:

  Query = FBpp0087735 (Len=1241)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087735, Len=1241):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDYVYCGTDPIGASEDILSVYDAGSAPGNGHFSPSFNGFNIGTTDPEYVELVPVLADGGEHFGVSSVAFDDYEELLWMGN 80  
WD40-rpts                                                       (_________________WD 1_________

Query       81 QGGHVTSYYTNSMQKYTSFQVHATDIVRDISTLDSGVLALTQTSLRHQIRRGLPKFTFKSNNMKEMVSMLQLSPHRLVMA 160 
WD40-rpts      ________)                                                                       

Query      161 GLQDELIDFDLRTLKETRIEHVGAGGCTVLRKNSRYLFAGDQLGTVTLRDLNSLSVQHTIKTHTNILSDFSVQGNLLISC 240 
WD40-rpts                (_________________WD 2_________________)   (____________________WD 3__

Query      241 GYSGRQNNLAIDRFLMVYDLRMLRLIAPIQVMIDPQMLKFLPSLTSQLAVVSSYGQVQLVDTVELSEPRVSMYQINTNGS 320 
WD40-rpts      __________________)                                          (__________________

Query      321 QCLSFDISSSSQAMAFGDQSGHINMIAAVQTPQPQFNLYSRSTEFADVVPQLPMVSITDTNFPLSSVMLPHLTTGTQWFS 400 
WD40-rpts      __WD 4____________________)                                                     

Query      401 DWPEELLRYRYHRPKTIDPEVLSNMKMQGPIGYSPNPRTARRNQIPYVIEQGGVCSPNGNGTAAATKAENGVKIIPRRYR 480 
WD40-rpts                                                                                      

Query      481 KVELKYTKLGTQDFDFDQHNQTCFAGLEATLPNSYCNAMLQILYFTDALRVKLLEHSCIKEFCLSCELGFLFNMLDKSTA 560 
WD40-rpts                                                                                      

Query      561 SSPCQASNFLRSFRTVPEASALGLILTDRSSNVNLISLIQNWNRFILHQMHYEIFDSSKNASTYSGSVQTSTNAENAGSS 640 
WD40-rpts                                                                                      

Query      641 ETSGSSDLYDSISDENSKEDDRERSKINAETDISKIFGTKQICINRCIKCQEEKIKESILLACNLSYPNHIKDSDQYFNF 720 
WD40-rpts                                                                                      

Query      721 GTILKRSLSSEKSIQAFCERCKKFSPTNQSVKVTSLPQILSINCGLNNEKDITFLKRQLNRCSEKTTVDAAASLSTSKPC 800 
WD40-rpts                                                                                      

Query      801 RYGANCSRSDCHFMHPDRKSPSHTSQPNAVNNSPNGRQKSWFPLTFTMGINDQGEVQVQTQSDASSGKSEQEEETEKPPT 880 
WD40-rpts                                                                                      

Query      881 KGLDNNRMYALHAVVCQVDDGTQKNLVSLINVQRPYHTMKLAESADDPQSQWYIFNDFSISPVSPQESVWFTLDWKVPCI 960 
WD40-rpts                                                                                      

Query      961 LFYRHVEDDSESASTTSSTVTESEETIPSESSSGSPTNLSNPFLEEIVSPMLGNLSADATLQPLQSDEMPQSGDLVAMDA 1040
WD40-rpts                                                                                      

Query     1041 EFVTLNPEENEIRPDGKTATIKPCHMSVARISCIRGQGPAEGVPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRL 1120
WD40-rpts                                                                                      

Query     1121 TALKYSYQKLKYLVDVGVIFVGHGLKNDFRVINIYVPSEQIIDTVHLFHMPHHRMVSLRFLAWHFLGTKIQSETHDSIED 1200
WD40-rpts                                                                                      

Query     1201 ARTTLQLYKHYLKLQEEKKFANALKNLYERGKQLQWKVPED 1241
WD40-rpts                                               

4 WD40-repeats found in QUERY=FBpp0087735 (Len=1241):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    50-89       5.36  335.96  0.00185       22.5%     40.04
  WD 2:  Seg 13   171-210      4.56  302.82  0.00516       17.5%     46.14
  WD 3:  Seg 17   214-259      3.27  249.54  0.02667       20.0%     33.65
  WD 4:  Seg 24   302-347      4.16  286.42  0.00857       20.0%     49.65

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   50-89     ELV------PVLADGGEHFGVSSVAFDDY-------EELLWMGNQGGHVTSYY
   WD 2  171-210    LRT------LKETRIEHVGAGGCTVLRKN-------SRYLFAGDQLGTVTLRD
   WD 3  214-259    -LS------VQHTIKTHTNILSDFSVQGNLLISCGYSGRQNNLAIDRFLMVYD
   WD 4  302-347    TVELSEPRVSMYQINTNGSQCLSFDISSS-------SQAMAFGDQSGHINMIA

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD