Input parameters:

  Query = FBpp0087731 (Len=620)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087731, Len=620):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLGKKHVLGFSPNGGQLFASVDESGVLRIWNTETNTLYQEFTPNLQLSGSCTALTWVLVAGSRPKKSRKSLQAQDAAGD 80  
WD40-rpts      (_____________WD 1_____________)                           (________________WD 2

Query       81 QLHIALGTYKGSVVIYSLAEGKISRTLSGDSHDGPVTSITNDNAGHLYTVGADCRVVVWSLTDERSIAEWQVGPEKPQNI 160 
WD40-rpts      ________________)   (_________________WD 3_________________)   (________________

Query      161 VYLQKSGTLAIGYRQLKVYDIKTKELVETFTGHSGEINTISSVASTDGTEFVLTTAKMERVICFWKIDKKGKNKASACTL 240 
WD40-rpts      WD 4_______________)   (___________________WD 5__________________)        (_____

Query      241 LMEDLAYCLTSEVRDDGQLRVASVTRNGIIHIYLLNVNSLSAEKFVKPKVSLQIVSDGAETVEPLLAVAAHFVTDSNRSH 320 
WD40-rpts      ____________WD 6_________________)(_____________________WD 7____________________

Query      321 EILFGYGSRQQLQFERFTPNYGEKLNVIVRADPKKLYAKKKGKEQPGYQAATKVQKPIVNQKNVEYNSALPISQKKVQNE 400 
WD40-rpts      )                                                                               

Query      401 VPMEARLEHLKIQGTKLSGGKLLTQSKTQLLMQALHSKDQAMIQAVLSTQDPETIQLTLDRLPLDYVNPLVNELSILLQG 480 
WD40-rpts                                                                                      

Query      481 KHASVRSALRWLHALTSTHTSVLMSEDKEALREKLAVCLGVAEQRMHCLSEALQITGRVNLIINQMKRNADNHLNDNKAL 560 
WD40-rpts                                                                                      

Query      561 ILDEDPDEPDPEAETNWSDLEEDQPGSPKSPLEDELVADDDLATDDGNADADTDSDVSMD 620 
WD40-rpts                                                                  

7 WD40-repeats found in QUERY=FBpp0087731 (Len=620):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       4.09  283.68  0.00932       20.0%     47.26
  WD 2:  Seg  6    60-97       5.81  354.59  0.00104        7.5%     43.88
  WD 3:  Seg  9   101-140      6.50  383.31  0.00042       37.5%     55.69
  WD 4:  Seg 13   144-180      5.17  328.36  0.00234       12.5%     47.97
  WD 5:  Seg 17   184-226      5.85  356.11  0.00099       27.5%     53.17
  WD 6:  Seg 21   235-274      4.90  317.00  0.00332       17.5%     49.34
  WD 7:  Seg 25   275-321      3.69  267.09  0.01556       10.0%     13.40

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     MS-----------LGKKHVLG--FSPNGGQ-L--FA-------SVDESGVLRIWN
   WD 2   60-97     VAG--SRPKK--SRKSLQAQD--AAGDQ-L-H--IA-------LGTYKGSVVIYS
   WD 3  101-140    -GKISRTLSGDSHDGPVTSIT--NDNAG---H--LY-------TVGADCRVVVWS
   WD 4  144-180    -ERSIAEWQV--GPEKPQNIV--YLQKS-G-T--LA-------IGYR--QLKVYD
   WD 5  184-226    -KELVETFTG--HSGEINTISSVASTDG-T-EFVLT-------TAKMERVICFWK
   WD 6  235-274    -ASACTLLME--DLAYCLTSE--VRDDG-QLR--VA-------SVTRNGIIHIYL
   WD 7  275-321    LNVNSLSAEK--FVKPKVSLQ--IVSDG-A-E--TVEPLLAVAAHFVTDSNRSHE

   WD40 Template    TGECLRTLSG--HTSGVTSVS--FSPDG-K-R--LV-------SGSEDGTIKVWD