Input parameters:

  Query = FBpp0087724 (Len=1241)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087724, Len=1241):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIKELQKTVNIAWSPAQQQQILLAAGTAAQQFDSNANSTLELYSPNFSDATYDLELRASVSSQYKFQKLIWSPVGPHPS 80  
WD40-rpts                                                                                      

Query       81 GLIVGGCEAGQINIYSADKLLAGKEEPLLKRQDKHTGAVSGLDFNPFQNNLLASCASESEILIWDLNNPETSMSPGTKTQ 160 
WD40-rpts                       (_____________________WD 1_____________________)(______________

Query      161 PLEDVKNVAWNRQVQHILASVFSTRCVIWDLRKSQQIIKLSDSQSRVRWHAIEWHPEAATQVWLASEDDQAPVVQLWDLR 240 
WD40-rpts      ______WD 2___________________)                                                  

Query      241 YATAPAKTYQIHERGVLGMSWCLQDNDLMVSCGKDNRIYCWNPNTKIPEGEILSEVATTASWYSDVQFCPRNPALIASAS 320 
WD40-rpts             (_______________WD 3______________)       (_________________WD 4_________

Query      321 LEGAVSIYSLHGGTHHLVQTANKIADSFPGMDQFAQEPIPQQATQVVYHDLAHAPKWMKRPCGVAFGFGGKLVSFNGTSK 400 
WD40-rpts      ________)                                                                       

Query      401 TVKVQQLTTESALVDRANALERSLVDANYSDYCRQRADETPDQHGRYIWYFIKANFELNPKEEMLNLLGYNKDDIDSKFN 480 
WD40-rpts                                                                                      

Query      481 KFIKETDGNSHSDVDTLTTRISTLTHQTQDNKFDGNAIDSQNHNDFATPPRPQFKVPSGDHSDSLIAEAILTGNVDAAVE 560 
WD40-rpts                                                                                      

Query      561 LCLEAQRIPEALIIASTAGIETLNRTQTRYLLQQKNELSHVISALVSRDWLDFVNRCTVDSWKEALVAALKHSERKVVDI 640 
WD40-rpts                                                                                      

Query      641 CERLGDRLLSECASSAEFTRNAMLCYICAGSIDKLVTAWYQLKRLEQQNPGYKPNTTELQDLAEMVMLMCKSLEQQGISV 720 
WD40-rpts                                                                                      

Query      721 DLAGRFAGFLTEYGGLLASQGALTAALQYITTLGGGAAASESDVLQSLRDRINNAVNLDYTQPQAAVAAAPHGYQPTRGR 800 
WD40-rpts                                                                                      

Query      801 GSFSQPQPSAPMPYGQPPNQYAQPSWPAQVPPLQTSYPGAQQPQAPPQIFNPQPVKPEPLAQPPRPLSNASSSGGPPPAG 880 
WD40-rpts                                                                                      

Query      881 GASSSGGSGLSGRSKYVLDPSVAAPTSSYGMPYNPVPAPVPSAVPFGGGGVPGPAPQPASVPTYNSNAFNTNPIAAAQPY 960 
WD40-rpts                                                                                      

Query      961 NPSPLMPAQQNQFVPGVNPIETMPPPAVPPVIQNVQRNPTPPPGWNDPPALKSSRAPKPKPVVEPSAAIFHPLFPVDPNQ 1040
WD40-rpts                                                                                      

Query     1041 NQNGYVDPSQYQHAAPLGGVPNTYYNPAAFNNNPQQQQQHQQSYLQPQQPAPGIQQPNWQGQQQTIGYTEQPAPIQQQRQ 1120
WD40-rpts                                                                                      

Query     1121 PAPPKEKPPLPEEYIYLQTVLEELKNRCLGATNDPRTKRKFVDVVKRLENLYDCLRDGKLTPTTVQYLNQIVQYIQISDY 1200
WD40-rpts                                                                                      

Query     1201 ANAMEIHTQIAFGTDFAQCAGFMQGLKVLLQSASELQLVLR 1241
WD40-rpts                                               

4 WD40-repeats found in QUERY=FBpp0087724 (Len=1241):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    98-145      4.43  297.81  0.00602       27.5%     33.11
  WD 2:  Seg 11   146-190      2.89  234.22  0.04257       12.5%     33.80
  WD 3:  Seg 18   248-282      4.66  306.99  0.00453       27.5%     30.69
  WD 4:  Seg 20   290-329      3.59  262.95  0.01767       25.0%     48.44

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   98-145    -DK-----LLAGKEEPLLKRQDKHTGAVSGLDFNPFQNNLLASCASESEILIWD
   WD 2  146-190    LNNPETSMSPGTKTQ--------PLEDVKNVAWNR-QVQHILASVFSTRCVIWD
   WD 3  248-282    -----------TYQI--------HERGVLGMSWCLQDNDLMVSCGKDNRIYCWN
   WD 4  290-329    -GE-----ILSEVAT--------TASWYSDVQFCPRNPALIASASLEGAVSIYS

   WD40 Template    TGE-----CLRTLSG--------HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD