Input parameters:

  Query = FBpp0087723 (Len=1240)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087723, Len=1240):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIKELQKTVNIAWSPAQQQQILLAAGTAAQQFDSNANSTLELYSPNFSDATYDLELRASVSSQYKFQKLIWSPVGPHPS 80  
WD40-rpts                                                                                      

Query       81 GLIVGGCEAGQINIYSADKLLAGKEEPLLKRQDKHTGAVSGLDFNPFQNNLLASCASESEILIWDLNNPETSMSPGTKTQ 160 
WD40-rpts                       (_____________________WD 1_____________________)(______________

Query      161 PLEDVKNVAWNRQVQHILASVFSTRCVIWDLRKSQQIIKLSDSQSRVRWHAIEWHPEAATQVWLASEDDQAPVVQLWDLR 240 
WD40-rpts      ______WD 2___________________)                                                  

Query      241 YATAPAKTYQIHERGVLGMSWCLQDNDLMVSCGKDNRIYCWNPNTKIPEGEILSEVATTASWYSDVQFCPRNPALIASAS 320 
WD40-rpts             (_______________WD 3______________)       (_________________WD 4_________

Query      321 LEGAVSIYSLHGGTHHLVQTANKIADSFPGMDQFAQEPIPQQATQVVYHDLAHAPKWMKRPCGVAFGFGGKLVSFNGTSK 400 
WD40-rpts      ________)                                                                       

Query      401 TVKVQQLTTESALVDRANALERSLVDANYSDYCRQRADETPDQHGRYIWYFIKANFELNPKEEMLNLLGYNKDDIDSKFN 480 
WD40-rpts                                                                                      

Query      481 KFIKETDGNSHSDVDTLTTRISTLTHTQDNKFDGNAIDSQNHNDFATPPRPQFKVPSGDHSDSLIAEAILTGNVDAAVEL 560 
WD40-rpts                                                                                      

Query      561 CLEAQRIPEALIIASTAGIETLNRTQTRYLLQQKNELSHVISALVSRDWLDFVNRCTVDSWKEALVAALKHSERKVVDIC 640 
WD40-rpts                                                                                      

Query      641 ERLGDRLLSECASSAEFTRNAMLCYICAGSIDKLVTAWYQLKRLEQQNPGYKPNTTELQDLAEMVMLMCKSLEQQGISVD 720 
WD40-rpts                                                                                      

Query      721 LAGRFAGFLTEYGGLLASQGALTAALQYITTLGGGAAASESDVLQSLRDRINNAVNLDYTQPQAAVAAAPHGYQPTRGRG 800 
WD40-rpts                                                                                      

Query      801 SFSQPQPSAPMPYGQPPNQYAQPSWPAQVPPLQTSYPGAQQPQAPPQIFNPQPVKPEPLAQPPRPLSNASSSGGPPPAGG 880 
WD40-rpts                                                                                      

Query      881 ASSSGGSGLSGRSKYVLDPSVAAPTSSYGMPYNPVPAPVPSAVPFGGGGVPGPAPQPASVPTYNSNAFNTNPIAAAQPYN 960 
WD40-rpts                                                                                      

Query      961 PSPLMPAQQNQFVPGVNPIETMPPPAVPPVIQNVQRNPTPPPGWNDPPALKSSRAPKPKPVVEPSAAIFHPLFPVDPNQN 1040
WD40-rpts                                                                                      

Query     1041 QNGYVDPSQYQHAAPLGGVPNTYYNPAAFNNNPQQQQQHQQSYLQPQQPAPGIQQPNWQGQQQTIGYTEQPAPIQQQRQP 1120
WD40-rpts                                                                                      

Query     1121 APPKEKPPLPEEYIYLQTVLEELKNRCLGATNDPRTKRKFVDVVKRLENLYDCLRDGKLTPTTVQYLNQIVQYIQISDYA 1200
WD40-rpts                                                                                      

Query     1201 NAMEIHTQIAFGTDFAQCAGFMQGLKVLLQSASELQLVLR 1240
WD40-rpts                                              

4 WD40-repeats found in QUERY=FBpp0087723 (Len=1240):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    98-145      4.42  297.21  0.00614       27.5%     32.29
  WD 2:  Seg 11   146-190      2.90  234.60  0.04208       12.5%     35.28
  WD 3:  Seg 18   248-282      4.70  308.78  0.00429       27.5%     30.41
  WD 4:  Seg 20   290-329      3.61  263.74  0.01724       25.0%     47.22

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   98-145    -DK-----LLAGKEEPLLKRQDKHTGAVSGLDFNPFQNNLLASCASESEILIWD
   WD 2  146-190    LNNPETSMSPGTKTQ--------PLEDVKNVAWNR-QVQHILASVFSTRCVIWD
   WD 3  248-282    -----------TYQI--------HERGVLGMSWCLQDNDLMVSCGKDNRIYCWN
   WD 4  290-329    -GE-----ILSEVAT--------TASWYSDVQFCPRNPALIASASLEGAVSIYS

   WD40 Template    TGE-----CLRTLSG--------HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD