Input parameters:

  Query = FBpp0087552 (Len=322)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087552, Len=322):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRHEIGVLCPGHSDSVVELSFNRDYDTGYFLASAGLDGVAALRHGDTGDCITHLRKHTDSVWSVSLSHDAKILASGGADC 80  
WD40-rpts       (___________________WD 1__________________)   (_________________WD 2___________

Query       81 KVRVWDALLGKQLKKLRHTKTVACVDLNPKATRLLTGCIDQESPLALFDMEQSEKAPLMEFRGHSRGVRDVIFCLEEHCF 160 
WD40-rpts      _____)   (_________________WD 3_________________)     (_________________WD 4____

Query      161 LSSSYDRTVRMWDCRTGTRTNSIFLPHHVKSLELHHSGDIVTIAYAGGVIFLDPKSFEVLKHRKLPYKVTAASLSPNKGI 240 
WD40-rpts      ____________)(_________________WD 5_________________)(__________________WD 6____

Query      241 YVCGNNMGYSFKYDYDTDVDRGLYVSQEPSAVLALSFSPDGEVCAIGSQDGSIILWQMNPKQASVVGHLKDEDDGEKNGS 320 
WD40-rpts      _____________)(___________________WD 7__________________)                       

Query      321 IS 322 
WD40-rpts        

7 WD40-repeats found in QUERY=FBpp0087552 (Len=322):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-44       8.33  458.71  4.1e-05       30.0%     46.52
  WD 2:  Seg  4    48-86      10.60  552.53  2.2e-06       47.5%     56.37
  WD 3:  Seg  8    90-129      7.06  406.45  0.00021       32.5%     56.03
  WD 4:  Seg 12   135-173      9.30  498.75  1.2e-05       32.5%     52.66
  WD 5:  Seg 16   174-213      5.37  336.50  0.00182       20.0%     49.86
  WD 6:  Seg 20   214-254      7.75  434.69  8.6e-05       22.5%     55.67
  WD 7:  Seg 24   255-297      9.24  496.52  1.3e-05       37.5%     54.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-44     RH---EI-GVLCP-GHSDSVVELSFNRDYDTGYFLASAGLD--GVAALRH
   WD 2   48-86     -G---DC-ITHLR-KHTDSVWSVSLSHD---AKILASGGAD--CKVRVWD
   WD 3   90-129    -G---KQ-LKKL--RHTKTVACVDLNPK---ATRLLTGCIDQESPLALFD
   WD 4  135-173    -K---AP-LMEFR-GHSRGVRDVIFCLE---EHCFLSSSYD--RTVRMWD
   WD 5  174-213    CR---TG-TRTNSIFLPHHVKSLELHHS---GDIVTIAY-A--GGVIFLD
   WD 6  214-254    PK---SFEVLKHR-KLPYKVTAASLSPN---KGIYVCGNNM--GYSFKYD
   WD 7  255-297    YDTDVDR-GLYVS-QEPSAVLALSFSPD---GEVCAIGSQD--GSIILWQ

   WD40 Template    TG---EC-LRTLS-GHTSGVTSVSFSPD---GKRLVSGSED--GTIKVWD