Input parameters:

  Query = FBpp0087335 (Len=704)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087335, Len=704):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLEVSNINGGNGTQLSHDKRELLCLLKLIKKYQLKSTEELLCQEANVSSVELSEISESDVQQVLGAVLGAGDANRERKH 80  
WD40-rpts                                                                                      

Query       81 VQSPAQGHKQSAVTEANAAEELAKFIDDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASGLRE 160 
WD40-rpts                                                                                      

Query      161 KAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHSLFKRHIQDRRQEVVADIVSKYLH 240 
WD40-rpts                                                                                      

Query      241 FDTYEGMARNKLQCVATAGSHLGEAKRQDNKMRVYYGLLKEVDFQTLTTPAPAPEEEDDDPDAPDRPKKKKPKKDPLLSK 320 
WD40-rpts                                                                                      

Query      321 KSKSDPNAPSIDRIPLPELKDSDKLLKLKALREASKRLALSKDQLPSAVFYTVLNSHQGVTCAEISDDSTMLACGFGDSS 400 
WD40-rpts                                                    (_________________WD 1____________

Query      401 VRIWSLTPAKLRTLKDADSLRELDKESADINVRMLDDRSGEVTRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLL 480 
WD40-rpts      ____)(_____________WD 2____________)   (_________________WD 3________________)  

Query      481 TWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRL 560 
WD40-rpts       (_________________WD 4________________)   (_________________WD 5_______________

Query      561 WDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDN 640 
WD40-rpts      _)   (_________________WD 6________________)   (_________________WD 7___________

Query      641 NLTLWDFHKVTEDYISNHITVSHHQDENDEDVYLMRTFPSKNSPFVSLHFTRRNLLMCVGLFKS 704 
WD40-rpts      _____)                                                          

7 WD40-repeats found in QUERY=FBpp0087335 (Len=704):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   367-405      7.73  434.14  8.8e-05       25.0%     56.65
  WD 2:  Seg 11   406-436      4.06  282.48  0.00967       10.0%     37.57
  WD 3:  Seg 14   440-478     10.04  529.41  4.6e-06       45.0%     54.33
  WD 4:  Seg 18   482-520      9.14  492.09  1.5e-05       37.5%     51.72
  WD 5:  Seg 22   524-562     10.08  531.24  4.3e-06       37.5%     44.81
  WD 6:  Seg 25   566-604     10.38  543.52  2.9e-06       42.5%     55.91
  WD 7:  Seg 29   608-646     10.03  528.82  4.6e-06       40.0%     53.79

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  367-405    SAVFYTVLNSHQGVTCAEISDDSTMLACGFGDSSVRIWS
   WD 2  406-436    --------LTPAKLRTLKDADSLRELDKESADINVRMLD
   WD 3  440-478    GEVTRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWS
   WD 4  482-520    WSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWA
   WD 5  524-562    NQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWD
   WD 6  566-604    GQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWD
   WD 7  608-646    GSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD