Input parameters:

  Query = FBpp0087322 (Len=949)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087322, Len=949):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFSYKFSNLLGTIYRNGNLVFTPDGNSVISPVGNRITVYDLKNNKSRTLSLESRYNYTNIALSPDGSLLIAVNEKGEAQ 80  
WD40-rpts            (_______________WD 1______________)   (_________________WD 2______________

Query       81 LISMMSCTVIHRHKFQTGVQCICFSPNGAFFAVAVQNVVLIFCAPGEITGEYNPFVLRRRFLGGFDDVTWLDWSSDSRLL 160 
WD40-rpts      __)(__________________WD 3_________________)(______________________WD 4_________

Query      161 AIGCRDSSTKIVAINYTKNFRTYNLSGHTDAIVACFFEANSLHLNTISRNGQLCLWECSLAPSDLEDAERPKIAPPQRKK 240 
WD40-rpts      ____________)(___________________WD 5___________________)(__________________WD 6

Query      241 EKKAVSDNESEDDVENVVEKDALKEESTKEAEDVNHIKNEDETKSHPFFYKKITRHYLADEPRKEQRDVQLTAANYNTRT 320 
WD40-rpts      _________________)                                     (__________________WD 7__

Query      321 KVLVVAFSSGAFYLYELPDVNMIHSLSISDYPISAALFNCTGDWVALASREIGQLLVWEWQSEQYIMKQQGHSSEMTCIA 400 
WD40-rpts      _______________)   (_________________WD 8_________________)   (_________________

Query      401 YSSDGQFIATGGEDSKVKLWNTQSSFCFVTFSEHTSGVTGIQFSRNKKFLVSSSLDGTVRAFDVNRYRNFRTFTSPNPAQ 480 
WD40-rpts      WD 9________________)   (_________________WD10________________)(________________

Query      481 FSCVAVDYSGELVVAGGQDVFDIFLWSVKTGKLLEIISGHEGPVVSIAFSPVATSSTLVSGSWDKTVKIWNCLESNSEHE 560 
WD40-rpts      ___WD11___________________)   (__________________WD12_________________)   (_____

Query      561 TIDAVSDVTNVTFSPSGEEIAVATLSGNITIFDIKSAGQVTTIEGRNDLSAGRLETDIITARKNAQANYFSTIEYSADGE 640 
WD40-rpts      ____________WD13________________)                             (______________WD1

Query      641 CILAAGKSANICIYHVREAILLKKFEITQNHSLDGLNDFISRKHLSEFGNMALVEEREELEGGRVAIRLPGVQRGDMSSR 720 
WD40-rpts      4_____________)           (____________________WD15___________________)   (_____

Query      721 RFQQEVRVFSVKFSPTGQAFAAAGTEGLCIYALDKGVVFDPFDLSLEVTPKAVHESLKQQNYTKALVMSLKLNEPNLIAL 800 
WD40-rpts      ___________WD16________________)                                                

Query      801 VLERVPYKDVELVCADLSPEFAQRLLQQLARQLQSTPHIEFYLQWSCCLLTKHGNQDGVFQHTGLLALHEVLSRKYEMLN 880 
WD40-rpts                                                                                      

Query      881 KICDYNKYTLKVLLDRADKLEQKNEGKPNATEEDSDEEMLLIRSKDDENGQAQFSDEEESDSGSEEEMA 949 
WD40-rpts                                                                           

16 WD40-repeats found in QUERY=FBpp0087322 (Len=949):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-41       4.29  291.84  0.00724       25.0%     44.51
  WD 2:  Seg  4    45-83       6.44  380.62  0.00046       20.0%     57.68
  WD 3:  Seg  8    84-124      5.07  324.26  0.00265       17.5%     52.07
  WD 4:  Seg 12   125-173      7.14  409.65  0.00019       30.0%     56.63
  WD 5:  Seg 16   174-217      7.52  425.27  0.00012       25.0%     53.75
  WD 6:  Seg 20   218-258      3.51  259.62  0.01958        2.5%     20.93
  WD 7:  Seg 23   296-336      5.78  353.34  0.00108       12.5%     46.10
  WD 8:  Seg 26   340-379      6.26  373.15  0.00058       20.0%     55.81
  WD 9:  Seg 30   383-421      9.39  502.71  1.0e-05       30.0%     57.53
  WD10:  Seg 34   425-463     10.25  538.05  3.5e-06       50.0%     54.53
  WD11:  Seg 38   464-507      5.05  323.27  0.00274       20.0%     54.97
  WD12:  Seg 42   511-551      9.44  504.73  9.8e-06       47.5%     56.05
  WD13:  Seg 46   555-593      7.69  432.14  9.3e-05       27.5%     57.94
  WD14:  Seg 51   623-655      5.01  321.54  0.00289       10.0%     48.25
  WD15:  Seg 55   667-711      3.07  241.51  0.03410       12.5%     31.13
  WD16:  Seg 57   715-752      4.83  314.24  0.00362       22.5%     48.81

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-41     ------------------FSNLLGTIYRNGNLVFTP--DGNSVISPVGN--------RITVYD
   WD 2   45-83     -N-K---------S----RTLSLESRYNYTNIALSP--DGSLLIAVNEK-G------EAQLIS
   WD 3   84-124    MM-S---------C---TVIHRHKFQTGVQCICFSP--NGAFFAVAVQN-V------VLIFCA
   WD 4  125-173    PG-EITGEYNPFVL----RRRFLGGFDDVTWLDWSS--DSRLLAIGCRD-S------STKIVA
   WD 5  174-217    IN-Y---------TKNFRTYNLSGHTDAIVACFFEA--NSLHLNTISRN-G------QLCLWE
   WD 6  218-258    CS-L---------A---PSDLEDAERPKIAPPQRKK--EKKAVSDNESE-D------DVENVV
   WD 7  296-336    HYLA---------D----EPRKEQRDVQLTAANYNT--RTKVLVVAFSS-G------AFYLYE
   WD 8  340-379    -V-N---------M----IHSLSISDYPISAALFNC--TGDWVALASREIG------QLLVWE
   WD 9  383-421    -E-Q---------Y----IMKQQGHSSEMTCIAYSS--DGQFIATGGED-S------KVKLWN
   WD10  425-463    -S-F---------C----FVTFSEHTSGVTGIQFSR--NKKFLVSSSLD-G------TVRAFD
   WD11  464-507    VN-R------YRNF----RTFTSPNPAQFSCVAVDY--SGELVVAGGQDVF------DIFLWS
   WD12  511-551    -G-K---------L----LEIISGHEGPVVSIAFSPVATSSTLVSGSWD-K------TVKIWN
   WD13  555-593    -S-N---------S----EHETIDAVSDVTNVTFSP--SGEEIAVATLS-G------NITIFD
   WD14  623-655    ---------------------KNAQANYFSTIEYSA--DGECILAAGKS-A------NICIYH
   WD15  667-711    IT-Q--------------NHSLDGLNDFISRKHLSE--FGNMALVEERE-ELEGGRVAIRLPG
   WD16  715-752    -G-D---------M----SSRRFQQEVRVFSVKFSP--TGQAFAAAGTE-G-------LCIYA

   WD40 Template    TG-E---------C----LRTLSGHTSGVTSVSFSP--DGKRLVSGSED-G------TIKVWD