Input parameters:

  Query = FBpp0087307 (Len=794)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087307, Len=794):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVENLHTSVACNRCTECADWGPNGWIAYGACNAIAIMDPKFQGNSAKVLFTLVEHTKRVNTVRWLDCDKLLSGGDDAIA 80  
WD40-rpts       (________________WD 1________________)       (________________WD 2_____________

Query       81 ILWELDETGTTKSFTLKGHTSGVNTVDGIRQQDGSWLLATAAADTTIKLWTFQDNNYVCFQTISLSDGFCFCLRLQLLPK 160 
WD40-rpts      ___)(_____________________WD 3____________________)(_____________________WD 4___

Query      161 SNQVLLAFSGDDETVSLWSEQVETAGEGDSLGRQFQRKHKLTGHEDWVRGLDFVVDGEDLLLASGSQDNFIRLWRIAPRS 240 
WD40-rpts      __________________)               (__________________WD 5_________________)  (__

Query      241 KEQMQENRVDLHQLSHNDDEIKVEEKILQLGKEAWYAVSLESVLYGHEGWIYGVHWHKTPDQELRLLSASIDKTVIIWAP 320 
WD40-rpts      _______________WD 6________________)(___________________WD 7__________________)(

Query      321 TEEGIWLEEVRVGEVGGNSVGFYGGKFSGDGHSIMAHSYQGGFHIWSQDPDRPQLWTPGVIVGGHYGEVRDLAWEHSGAY 400 
WD40-rpts      _____________________WD 8_____________________)             (______________WD 9_

Query      401 LMTASADQTTRLHAPWLQDGANPTWHELARPQIHGYDMQALALLSRYKFASGAEEKIVRTFQAPANFIENFRHISGIEND 480 
WD40-rpts      _____________)          (________________WD10________________)       (__________

Query      481 DAGDVLLDSLPKGASVPSLGLSNKAVYKVDSEVESTSKTSKDEYPDNYFVPIALETPPQEETLMQNTLWPELQKLYGHGY 560 
WD40-rpts      ________WD11_________________)(_______________WD12______________)   (___________

Query      561 EIFALAATADGSLLASTCKASNAEHAQIILWNPSNWKQIQKLSGHQLTVTQLSFSPDSRYLLSVSRDRRWCLYERQDSSV 640 
WD40-rpts      ________WD13___________________)   (_________________WD14________________)      

Query      641 SYQLVASTDKSNGVHTRIIWSCDWSHDGQFFVTSSRDGKVVVWKKEEDCKESSLNGWQANGVLELKNESITAVAFSNSYL 720 
WD40-rpts           (_________________WD15________________)          (_____________________WD16

Query      721 SGTDDTYILALGTETGLIKIYQFVRGAWKLLSDLNKSQAHHLTVRRLQFRPGKQLQLASCGEDHLVRIYDIKLT 794 
WD40-rpts      _____________________)        (_________________WD17_________________)    

17 WD40-repeats found in QUERY=FBpp0087307 (Len=794):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-39       4.37  295.11  0.00655       17.5%     50.44
  WD 2:  Seg  5    47-84       6.88  398.94  0.00026       32.5%     56.41
  WD 3:  Seg  9    85-131      6.20  370.75  0.00063       45.0%     56.66
  WD 4:  Seg 13   132-179      5.49  341.56  0.00155       17.5%     53.54
  WD 5:  Seg 17   195-235      6.96  402.11  0.00024       35.0%     54.04
  WD 6:  Seg 21   238-276      6.50  383.10  0.00043        7.5%     46.41
  WD 7:  Seg 24   277-319      7.34  417.85  0.00015       27.5%     52.28
  WD 8:  Seg 28   320-367      7.52  425.36  0.00012       25.0%     57.03
  WD 9:  Seg 32   381-414      7.06  406.37  0.00021       20.0%     46.05
  WD10:  Seg 35   425-462      5.49  341.50  0.00155       15.0%     50.34
  WD11:  Seg 39   470-510      6.72  392.26  0.00032       15.0%     43.73
  WD12:  Seg 43   511-545      2.78  229.47  0.04916       10.0%     23.49
  WD13:  Seg 46   549-592      6.99  403.25  0.00023       27.5%     46.67
  WD14:  Seg 50   596-634      9.22  495.53  1.3e-05       37.5%     57.03
  WD15:  Seg 55   646-684      8.39  461.12  3.8e-05       30.0%     41.11
  WD16:  Seg 59   695-742      6.43  380.39  0.00046       32.5%     48.26
  WD17:  Seg 62   751-790      6.09  366.34  0.00072       25.0%     44.47

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-39     QV-E--------NLHTSVACNRCTECAD--WG-------PNG-----WIA-----YGACNAIAIMD
   WD 2   47-84     -A-K--------VLFTLVEHTKRVNTVR--WL--------DCD---KLLS-----GGDDAIAILWE
   WD 3   85-131    LD-E----TGTTKSFTLKGHTSGVNTVDGIRQ-------QDGS--WLLAT-----AAADTTIKLWT
   WD 4  132-179    FQ-D----NNYVCFQTISLSDGFCFCLR--LQ---LLPKSNQV---LLAF-----SGDDETVSLWS
   WD 5  195-235    -F-Q--------RKHKLTGHEDWVRGLD--FV-------VDGE-DLLLAS-----GSQDNFIRLWR
   WD 6  238-276    -P-R--------SKEQMQENRVDLHQLS--HN-------DDEI---KVEE-----KILQLGKEAWY
   WD 7  277-319    AV-S--------LESVLYGHEGWIYGVH--WH-------KTPDQELRLLS-----ASIDKTVIIWA
   WD 8  320-367    PT-EEGIWLEEVRVGEVGGNSVGFYGGK--FS-------GDGH---SIMA-----HSYQGGFHIWS
   WD 9  381-414    ---------------IVGGHYGEVRDLA--WE-------HSGA---YLMT-----ASADQTTRLHA
   WD10  425-462    -W-H--------ELARPQIHGYDMQALA--LL-------SRYK----FAS-----GAEEKIVRTFQ
   WD11  470-510    NF-R--------HISGIENDDAGDVLLD--SL-------PKGA---SVPS----LGLSNKAVYKVD
   WD12  511-545    -S-E--------VESTSKTSKDEYPDNY--FV-------P-------IAL-----ETPPQEETLMQ
   WD13  549-592    -W-P--------ELQKLYGHGYEIFALA--AT-------ADGS---LLASTCKASNAEHAQIILWN
   WD14  596-634    -W-K--------QIQKLSGHQLTVTQLS--FS-------PDSR---YLLS-----VSRDRRWCLYE
   WD15  646-684    -A-S--------TDKSNGVHTRIIWSCD--WS-------HDGQ---FFVT-----SSRDGKVVVWK
   WD16  695-742    NGWQ--------ANGVLELKNESITAVA--FSNSYLSGTDDTY---ILAL-----GTETGLIKIYQ
   WD17  751-790    -L-S--------DLNKSQAHHLTVRRLQ--FR-------PGKQ--LQLAS-----CGEDHLVRIYD

   WD40 Template    TG-E--------CLRTLSGHTSGVTSVS--FS-------PDGK---RLVS-----GSEDGTIKVWD