Input parameters:

  Query = FBpp0087277 (Len=668)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087277, Len=668):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTHKTCQARKKMQVSFVIRDAEEKQHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIV 80  
WD40-rpts                          (_______________WD 1_______________)      (_________________

Query       81 LCCNGRNLISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTS 160 
WD40-rpts      WD 2________________)   (_________________WD 3________________)            (____

Query      161 SLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRRMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQ 240 
WD40-rpts      _____________WD 4________________)(__________________WD 5__________________)(___

Query      241 RCVQTIHVHKEGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNKTLVCEEQAPVLSLGYNIDKTGVWATTWNSDIRCWK 320 
WD40-rpts      _______________WD 6__________________)   (_________________WD 7________________)

Query      321 LPMYDRCTLNSSGGMDAQWTQGGTEVACIKGGAAIKECAVLNDKRYIITKDSQDQVVVYDVLRVVKKEQLGAVDFEAEVK 400 
WD40-rpts                            (________________WD 8________________)(___________________

Query      401 KRNKQVYIPNWFTVDLKTGMPTIVLGQEEVDCFSAWVSIEAGLPECVDPTTEIKINYGKLLLEALLEYWTPPHSIPPNEM 480 
WD40-rpts      __WD 9____________________)                                                     

Query      481 EPDMHGNGYFQVPKHTPVIFSEVGGRTVCRLLVRDAAGDSESTLLHETAPQWVTDVVIEKNIPKFLKIPFFLQPHPQMTK 560 
WD40-rpts                                                                                      

Query      561 PERTKKDRLVANEFIQCRKVCEHVLEKVLNAETTPSGGNANNSLQNSQSDANSEGSQLPAEERIELWCNDVVVDPNMDLR 640 
WD40-rpts                                                                                      

Query      641 TVRHFIWKQSTDLTFQYKTKQNFNYDGK 668 
WD40-rpts                                  

9 WD40-repeats found in QUERY=FBpp0087277 (Len=668):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-56       7.61  428.89  0.00010       25.0%     46.75
  WD 2:  Seg  5    63-101      8.79  477.74  2.3e-05       27.5%     53.76
  WD 3:  Seg  9   105-143      9.18  494.02  1.4e-05       30.0%     55.96
  WD 4:  Seg 13   156-194      8.53  466.88  3.2e-05       27.5%     45.70
  WD 5:  Seg 16   195-236     10.23  537.37  3.6e-06       55.0%     51.84
  WD 6:  Seg 20   237-278      8.72  475.06  2.5e-05       35.0%     58.24
  WD 7:  Seg 24   282-320      6.72  392.13  0.00032       12.5%     53.88
  WD 8:  Seg 29   343-380      5.13  326.70  0.00246       12.5%     55.52
  WD 9:  Seg 33   381-427      4.12  284.94  0.00897        7.5%     38.49

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-56     DA--E-------------EKQHRNGVNALQLDANNGKLYSAGRDAIIRVWN
   WD 2   63-101    -E--KYIQ--S-------MEHHNDWVNDIVLCCNGRNLISASCDTTVKVWN
   WD 3  105-143    -G--FCMS--T-------LRTHRDYVQALAYAKDREQVASAGLDKAIFLWD
   WD 4  156-194    -T--VTTS--S-------LTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD
   WD 5  195-236    PR--TCMRRMK-------LRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWN
   WD 6  237-278    LGQQRCVQ--T-------IHVHKEGVWSLLMSENFQYIISGSRDRNIIVTE
   WD 7  282-320    -P--SNKT--L-------VCEEQAPVLSLGYNIDKTGVWATTWNSDIRCWK
   WD 8  343-380    -G--TEVA--C-------IKGGAA-IKECAVLNDKRYIITKDSQDQVVVYD
   WD 9  381-427    VL--RVVK--KEQLGAVDFEAEVKKRNKQVYIPNWFTVDLKTGMPTIVLGQ

   WD40 Template    TG--ECLR--T-------LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD