Input parameters:

  Query = FBpp0087138 (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087138, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVLPPDPVFSLRSPDMGAVNSLCFQESDRLLAGTIKGSVFLWDLQTNRSALHFEVGSDPITSLHHTPDRLVTQEKGGTI 80  
WD40-rpts          (_________________WD 1_________________)   (________________WD 2____________

Query       81 TMFSIGGSSYVKERSIPGNHLGFCRSALHTNTSKTNEQLLFYPCEESSIGVLHVTDAAAPTQILVPDDPQLPKLGSVTCF 160 
WD40-rpts      ___)           (________________WD 3________________)           (_______________

Query      161 KPFECASQLFLLAGYESGHFLTWDISSSVILDVMELAQDATSVDYDPVTNRGIVGGPTDKLISFSYQRSSMQMQLGSELC 240 
WD40-rpts      __WD 4_________________)  (_________________WD 5________________)       (_______

Query      241 IKNPGVNGVRIRPDQKVFASAGWDGRIRIFSWKSLRPLAVLTQHKNGGVMDLAFSSQQVAMWHAPIMAAAGMDGQISLWD 320 
WD40-rpts      __________WD 6________________)   (____________________WD 7____________________)

Query      321 LYN 323 
WD40-rpts         

7 WD40-repeats found in QUERY=FBpp0087138 (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       6.45  381.24  0.00045       27.5%     54.06
  WD 2:  Seg  5    48-84       7.46  422.94  0.00012       22.5%     52.62
  WD 3:  Seg 10    96-133      6.05  364.49  0.00076       15.0%     40.27
  WD 4:  Seg 15   145-184      7.34  417.78  0.00015       15.0%     32.72
  WD 5:  Seg 18   187-225      6.88  399.00  0.00026       15.0%     56.85
  WD 6:  Seg 22   233-271      8.64  471.56  2.7e-05       27.5%     55.21
  WD 7:  Seg 26   275-320      6.78  394.93  0.00030       30.0%     55.72

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     PPDPVFSLRSPDMGAVNSLCFQES------D-RLLAGTIKGSVFLWD
   WD 2   48-84     -NRSALHFEVGSDP-ITSLHHTPD------R--LVTQEKGGTITMFS
   WD 3   96-133    IPG--NHLGFCRSA-LHTNTSKTN------EQLLFYPCEESSIGVLH
   WD 4  145-184    VPDDPQLPKLGSVT-CFKPFECAS------QLFLLAGYESGHFLTWD
   WD 5  187-225    -SSVILDVMELAQD-ATSVDYDPV------TNRGIVGGPTDKLISFS
   WD 6  233-271    -MQLGSELCIKNPG-VNGVRIRPD------QKVFASAGWDGRIRIFS
   WD 7  275-320    -LRPLAVLTQHKNGGVMDLAFSSQQVAMWHAPIMAAAGMDGQISLWD

   WD40 Template    TGECLRTLSGHTSG-VTSVSFSPD------GKRLVSGSEDGTIKVWD