Input parameters:

  Query = FBpp0086421 (Len=1263)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0086421, Len=1263):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLSERNTPSHGQGAGAGGGSGGLASGMHRQRPPDVEEALSSMLWTPYERTPLPSSSEEEAEEEDDDERLNRQLRKSHSS 80  
WD40-rpts                                                                                      

Query       81 YEASALNHPHHAHLPLFAHHQQALDSGSALLLPPVPSFPPFSLSAFDAAIAGFDPLAKVSFSASGVGGRRNRYSFPAYQG 160 
WD40-rpts                                                                                      

Query      161 SPTRTLTQWCSSAATSIKEPPSYDSLYNASSSKIGAPPATSLILKTSGEVGVALEPCDRSQRSPTKAVAEDQNPDREGGQ 240 
WD40-rpts                                                                                      

Query      241 DRDLDETESKAAPLTANVPAGLGLRRSFTDDYISQNCDPFTPATATQHNSNTETTATETQSPATNARSQQSEKNPGSSAA 320 
WD40-rpts                                                                                      

Query      321 NCIINEQRDEAATATATSAAAAAAAAAGAGNEETSSVAVQVSQPVSCTARERRELLRASNTNTPASSSSSTSSASNISYA 400 
WD40-rpts                                                                                      

Query      401 SNISGERSAISLSATFGGPTLYSASSSNRNCYNSSSSSSNYRPLYDDSSSSSVLRPNKCLAELERLYAEFRASESRFERG 480 
WD40-rpts                                                                                      

Query      481 LIQCQLDIENANATDTVSEMRLNVPATAAADTVASCSNSNSSSNNNSSSSSSVFLNVSGSSSTDSGDNQVVDEARSISNI 560 
WD40-rpts                                                                                      

Query      561 AVLPATATATTTTATSKSCQRQPSLTIQVNNNNNNNNNNNGNTNGTSNGNRVSVASPTSIVNNNNGVCVVNCSYTPSSSS 640 
WD40-rpts                                                                                      

Query      641 SNNNSSSSSSSCISNTTNSNISNNNSVVEINKCVPAAAKVFSASVQNQNRLNNNSSCPKGDQQHVAAASTASNNNHVQPD 720 
WD40-rpts                                                                                      

Query      721 NSVNIISVNASSSSYNNNHPRTFTSTECQTDDLSASTSSNMQQQHQQQQQQQQIRTREQRRKERRERRQQQQQQQQFQPH 800 
WD40-rpts                                                                                      

Query      801 HARRHPPPPPPPQLHPPPHLHHPHPHPLPHPHPAAMGLARALLPDILHAHYPPPYTALPVPVAMSAAPPPPPPSTAVAAS 880 
WD40-rpts                                                                                      

Query      881 AVAAAAQQPAHASPAPPPALTSVISTVPLPGPLPAPLMNDGRFTLPLPIMRRSPSERSGKGCCGQWFAGPPLRALIAVVA 960 
WD40-rpts                                                                                      

Query      961 LGGVACALGGAALGATGLAGPPNSHLTAALLMIGVGVVLVTVSGAAWRMTAPGGQSCLGIGLGTSVDLGRCGRRPCSRGG 1040
WD40-rpts      (_______________________WD 1_______________________)                            

Query     1041 GAPHGLLYPEFQHRPPPPSYQASMQEYRLRLLLLDRDRQNGVVRGNSPPPTYRSHAGSLLRAPLTTLRSGMGGGCGAGGT 1120
WD40-rpts                                                                                      

Query     1121 ISSSMGGSEYSLPPSYRSRNATPANLVCSERNIETAPSGRLLANEDLQLPEPSVVEQLPDYTALQSNTLLTSAIVEIESS 1200
WD40-rpts                                                                                      

Query     1201 NRIPERESNASNGAAAMSKSKDLVTIVTISQSPGSTHSQTQTETQNPAGQASALDQIDILAHL 1263
WD40-rpts                                                                     

1 WD40-repeats found in QUERY=FBpp0086421 (Len=1263):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   961-1012     3.69  267.06  0.01557       25.0%     12.67

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  961-1012   LGGVACALGGAALGATGLAGPPNSHLTAALLMIGVGVVLVTVSGAAWRMTAP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD------------GKRLVSGSEDGTIKVWD