Input parameters:

  Query = FBpp0086314 (Len=506)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0086314, Len=506):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSDESSDGLEELQSLKALYGQQEQEKPAKIKRERYIPKASQAKELNYVEVPMEKVLFGDRQRLLTNLAKSVGQKLPNDD 80  
WD40-rpts                                                                                      

Query       81 EDEQEENPGQAKPGDKRKAAWSDSDDEDLQVGDVKKATKHTGPLNHLRKDKSYKEYLTARFQRTLNQPKWAEKKVKNEDD 160 
WD40-rpts                                                                                      

Query      161 EDVSSDEELLRTVGFIDRKARNSDLPQKTLNFKRVKDLNRATYAEGNATSIQFHPTSTAALVAGMNGLATIYAVDGQKNE 240 
WD40-rpts                                           (_______________WD 1_______________)     (_

Query      241 RLHNMRFKKFPLACSRIAPCGTRAFFGSVKPFYYSYDLLEAKESKLKLPGAMEFMHRFEVSPCGKFIVTAGKFGAIHLLT 320 
WD40-rpts      ________________WD 2________________)    (_________________WD 3________________)

Query      321 AKTNELLHSFKQEGKVKGFTWSSDSKRILVCGSTSNVSVLNLRQNLIEHIFMDDGCIHGESIQLSPNQRLLATGSQEGVV 400 
WD40-rpts        (_________________WD 4________________)(___________________WD 5_______________

Query      401 NIYDYESIFASKAPQPEKRFMNLRTAITDLQFNHSSELLAMCSSEAPNAFKLAHFPSATVYSNFPAQNEKVGFVTSMAFS 480 
WD40-rpts      ___)         (__________________WD 6_________________)   (__________________WD 7

Query      481 PHSSFLAFATKGKQVPLFRLKYFKGY 506 
WD40-rpts      __________________)       

7 WD40-repeats found in QUERY=FBpp0086314 (Len=506):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   198-233      6.88  398.80  0.00026       15.0%     46.60
  WD 2:  Seg  7   239-277      7.49  423.99  0.00012       20.0%     54.63
  WD 3:  Seg 11   282-320      7.30  416.02  0.00015       25.0%     54.87
  WD 4:  Seg 15   323-361      6.81  395.94  0.00029       17.5%     55.61
  WD 5:  Seg 19   362-404      7.36  418.69  0.00014       22.5%     48.28
  WD 6:  Seg 23   414-454      5.62  346.74  0.00132       12.5%     46.24
  WD 7:  Seg 26   458-499      5.95  360.65  0.00086       17.5%     53.50

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  198-233    ----L---NRATYAEGN---ATSIQFHPTSTAALVAGMN--GLATIYA
   WD 2  239-277    -NERL---HNMRFKKFP---LACSRIAPCGTRAFFGSVK--PFYYSYD
   WD 3  282-320    -KESK---LKLPGAMEF---MHRFEVSPCGKFIVTAGKF--GAIHLLT
   WD 4  323-361    -TNEL---LHSFKQEGK---VKGFTWSSDSKRILVCGST--SNVSVLN
   WD 5  362-404    LRQNLIEHIFMDDGCIH---GESIQLSPNQRLLATGSQE--GVVNIYD
   WD 6  414-454    -PQPE---KRFMNLRTA---ITDLQFNHSSELLAMCSSEAPNAFKLAH
   WD 7  458-499    -ATVY---SNFPAQNEKVGFVTSMAFSPHSSFLAFATKG--KQVPLFR

   WD40 Template    TGECL---RTLSGHTSG---VTSVSFSPDGKRLVSGSED--GTIKVWD