Input parameters:

  Query = FBpp0086275 (Len=1051)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0086275, Len=1051):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKNAGRTSSKNVKTEVPRKVTKSPATSGPATTRESKERRSLAKQPDSLEGEKIARKTTTAAQPTTASKKPLATGKNKER 80  
WD40-rpts                                                                                      

Query       81 ESLSKRTTPSPGALRATTRHTTTTTNPPLQSKTTKTTKLVAKSKPNAVLDTYHSVTVASPPQKRRGQAEQEKESPTPSSK 160 
WD40-rpts                                                                                      

Query      161 EYSPVAQTQKEHKPQSPSKGDARIVPARSRTYTRTLDPEEVVILKRESAKQRSEVEAKESEPVKQPVAFEVKFDEAKKPE 240 
WD40-rpts                                                                                      

Query      241 PESDHYSDDFESYESDFETDASTPDEVESDEAQEPSSSEAEVEEEREEEDSEPTQNPITVIQRDKDQERKLDSGHYDMHL 320 
WD40-rpts                                                                                      

Query      321 RRNPLSSLSTQNQYDSFDTNSMANSEQLDSGISTTGVEKPRSGEANVYYGGYSGFVSHPVISRRGEELMAKLRFDQLNYH 400 
WD40-rpts                                                                                      

Query      401 LFEMKPLSYEGFMQSYGKLNASQVATQTQSPHMDGECQTLEVHSRSSWTQHPPHYGGQFVLSCSVDAELDETWSKQPADE 480 
WD40-rpts                                                                                      

Query      481 YEASISRLEQLHRLEQARSQQLQQKRLAKSTDLERLNSFLHRAGRLMGLVLEGKTTAHGQGNSPRNVPLQTGLLNALPVR 560 
WD40-rpts                                                                                      

Query      561 RIFGSAGNGQLVVTVHECPADSNVYKEDFASLLMVWSLANPSQPLRLLSTWAEVSRVALSAQAQDIVVAGLRDGSVAMWD 640 
WD40-rpts                                           (___________________WD 1__________________)

Query      641 LRETHSYCSKLDGHLTHFAATQSVVPMPEQQDKEVNAMDLGAVVDVRSFRSHLNAGGVAATSGLQTTYKEVQYASLNDSG 720 
WD40-rpts                                                                                      

Query      721 LLTMWTLVEGASSTNSNEFSSPWARVKLLQSGSCDLRSYLERRLLKSHQSAYEKTKSLFQGNIYSDDVLRELNDTQTLTT 800 
WD40-rpts                                                                                      

Query      801 ALQGQGLQGLRFTSIDTGSELIYVCTNRNFVLCCTRSLKTERFARIAVNESRFLFPTSLCVLSNENYVAVGLSNGSVMIL 880 
WD40-rpts                                                                                      

Query      881 NCNQRQRQRQRNQQRPKTGLPPATDEPDPETGKSCAIQNIILNERRSFDQQMDDNPTYDARPNTALELIERPRRSYEMRV 960 
WD40-rpts                                                                                      

Query      961 FDQQLLLSGSGLRQHLVQALILSSDGWQLSALTNGTVRHYDFYRDRELPVEELMDTRLKVTDIAGARSCGQEQVLLILDS 1040
WD40-rpts                                                                                      

Query     1041 TGKVQSRTLDY 1051
WD40-rpts                 

1 WD40-repeats found in QUERY=FBpp0086275 (Len=1051):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   598-640      3.59  262.78  0.01776       25.0%     29.11

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  598-640    LANPSQPLRLLSTWAEVSRVALSAQAQDIVVAGLRDGSVAMWD

   WD40 Template    TGECLRTLSGHT--SGVTSVSFSPDGKRLV-SGSEDGTIKVWD