Accession: FBpp0085923 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = FBpp0085923 (Len=628)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085923, Len=628):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSDELYRVKYSSSRYQRQHTPLNASSLHWQRQQYGHELDEMLRRRLLASPAYVDRLEQEAVLVGHEGCVNCLEWTTDGM 80  
WD40-rpts                                                             (_________________WD 1___

Query       81 WLASGSDDYRVMIWDPFRKKLVHVIRTKHLGNVFSVKFLPKTNNSIVATCAADKFIYVYDINDPNETLFSCICHFSRAKR 160 
WD40-rpts      ______________)(____________________WD 2___________________)    (_______________

Query      161 LATAQDSPHVFWSAGEDGCILQLDIREPHRCRPEEGIGVRLLNLHDQLENTEAKCLAINPRRTEYLAVGTNDPFARVYDR 240 
WD40-rpts      __WD 3_________________)                   (_______________WD 4_______________) 

Query      241 RKLPSTNGNGLSACVAYYAPGQIVKNISRNIVHEPRGITYLTFNGNGTELLVNIGCEHVYRFDLNHAEPPVFYDLPAFTS 320 
WD40-rpts                              (_________________WD 5________________)                 

Query      321 TLVHEEEPVKMPHRSRSLPTEIEVYKKEGNDFLENGKLVDAIDAYSAALAKYPQGEVLYLNRATALMRRGWFGDIYAALR 400 
WD40-rpts                                                                                      

Query      401 DCHEALRLDPSYVKAHFRLARALLELHRPQDADQCLQALIQRFPDFANNHGVLMLNKDIKENRRQSKSPEAPELQPVEVD 480 
WD40-rpts                                                                                      

Query      481 DGFRYLRLKNAEYDLRSTARDYMQRYVGHCNVTTDIKEANYLGSQGEFIAAGSDDGNMYIWEGDTGKIRAVYRADSAIVN 560 
WD40-rpts                             (_________________WD 6________________)   (______________

Query      561 CVQPHPSICMLATSGIDHNIKIWSPCAASAEERPNLVADVTRFVEDNQEKMRLDPFELHTRNAYCFNN 628 
WD40-rpts      ___WD 7________________)

7 WD40-repeats found in QUERY=FBpp0085923 (Len=628):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    56-95      11.04  570.72  1.3e-06       35.0%     48.47
  WD 2:  Seg  6    96-140      6.15  368.57  0.00067       25.0%     51.08
  WD 3:  Seg 10   145-184      6.52  384.04  0.00042       27.5%     50.95
  WD 4:  Seg 15   204-239      5.39  337.47  0.00176       15.0%     42.42
  WD 5:  Seg 19   265-303      6.98  403.03  0.00023       17.5%     40.00
  WD 6:  Seg 27   504-542      6.11  367.26  0.00070       17.5%     38.54
  WD 7:  Seg 31   546-584      8.31  457.86  4.2e-05       22.5%     53.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-95     RLE---QEAVLVGHEGCVNCLEWTT--DGMW-LASGSDDYRVMIWD
   WD 2   96-140    PFRKKLVHVIRTKHLGNVFSVKFLPKTNNSI-VATCAADKFIYVYD
   WD 3  145-184    -NE---TLFSCICHFSRAKRLATAQ--DSPHVFWSAGEDGCILQLD
   WD 4  204-239    --------LHDQLENTEAKCLAINP-RRTEY-LAVGTNDPFARVYD
   WD 5  265-303    -KN---ISRNIVHEPRGITYLTFNG--NGTE-LLVNIGCEHVYRFD
   WD 6  504-542    -QR---YVGHCNVTTDIKEANYLGS--QGEF-IAAGSDDGNMYIWE
   WD 7  546-584    -GK---IRAVYRADSAIVNCVQPHP--SICM-LATSGIDHNIKIWS

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP--DGKR-LVSGSEDGTIKVWD