Input parameters:

  Query = FBpp0085902 (Len=505)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085902, Len=505):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALVCALTNEVPETPVVSPHSGAVFEKRVIEKYLLENGCDPISGKELKPEELIEIKTPAVVKPKPPSATSIPATLKTMQD 80  
WD40-rpts                                                                                      

Query       81 EWDALMIHSFTQRQQLQTTRQELSHALYQHDAACRVIARLNKEVAAAREALATLKPQAGIANAPTAIPQPALASEAGGAA 160 
WD40-rpts                                                                                      

Query      161 AHPMEQAGMSAEVIQKLQDKATVLTQERKKRGRTVPEDLVTTDQVKNFLTVASHPGLHSASVPGILALDINSADHSKILT 240 
WD40-rpts                                                         (_________________WD 1_______

Query      241 GGNDKNATVFNKDTEQMVAILKGHTKKITKVIYHPNEDTVITGSPDMNIRIWHVPTSQTQLLLRCHEGPVTGLSLHPTGD 320 
WD40-rpts      __________)   (_________________WD 2________________)   (_________________WD 3__

Query      321 YLLSTSSDKHWAFSDIRTGRLLTKVIDTAEVGLTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISF 400 
WD40-rpts      ______________)(___________________WD 4__________________)   (_________________W

Query      401 SENGYYLATAADDACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGSDVRVYLCKQWQELKVFNDHTALATG 480 
WD40-rpts      D 5________________)   (________________WD 6________________)   (_______________

Query      481 VRFGKHAQYLASTSMDRTLKLYAIE 505 
WD40-rpts      __WD 7________________)  

7 WD40-repeats found in QUERY=FBpp0085902 (Len=505):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   212-251      5.70  349.94  0.00120       17.5%     49.23
  WD 2:  Seg 10   255-293      9.58  510.44  8.2e-06       30.0%     56.94
  WD 3:  Seg 14   297-335      8.52  466.68  3.2e-05       30.0%     58.12
  WD 4:  Seg 18   336-378      8.40  461.75  3.7e-05       27.5%     54.22
  WD 5:  Seg 22   382-420      9.56  509.36  8.5e-06       30.0%     49.14
  WD 6:  Seg 25   424-461      4.62  305.42  0.00476       17.5%     51.73
  WD 7:  Seg 29   465-503      8.60  469.76  2.9e-05       30.0%     55.41

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  212-251    ASH----PGLHSASVP-GILALDINSADHSKILTGGNDKNATVFN
   WD 2  255-293    -EQ---MVAILKGHTK-KITKVIY-HPNEDTVITGSPDMNIRIWH
   WD 3  297-335    -SQ---TQLLLRCHEG-PVTGLSL-HPTGDYLLSTSSDKHWAFSD
   WD 4  336-378    IRTGRLLTKVIDTAEV-GLTTAQF-HPDGLIFGTGTVDSQVKIWD
   WD 5  382-420    -QS---NVANFPGHTG-PISAISF-SENGYYLATAADDACVKLWD
   WD 6  424-461    -LK---NFKTIQLDDGYEVKDLCF-DQSGTYLAIAGSD--VRVYL
   WD 7  465-503    -WQ---ELKVFNDHTA-LATGVRF-GKHAQYLASTSMDRTLKLYA

   WD40 Template    TGE---CLRTLSGHTS-GVTSVSF-SPDGKRLVSGSEDGTIKVWD