WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0085900 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0085900 (Len=1698) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0085900, Len=1698): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MAAPIDESVLNALRGVTSAHTRLPKPLLIKIYVASLKQEFNQERRMLLELVGPELQSLYDDRQIELEFVDMHFGTGDLEV 80
WD40-rpts
Query 81 HQLERDPYLIHDYLHEIDTCHAHTKSVFFMVLVGDGIGRQLLPTKIDEDIFSAVLADQQTSADHEAMLVKWYERDASQTQ 160
WD40-rpts
Query 161 RQLKQDYRLMNVDAWLAESQRMQSFLEQAFQSLLQGSGASGRSPDFMERVQLLRRTQIEREVSQAMALTSEKILAVFRER 240
WD40-rpts
Query 241 AAQCSKGDVEAAERLRKIKDELTMNLSTDNHTTLVVPGSAASEAIDPDNEDHESYLSKFKNKVTDKLRLLIEAHITNDPD 320
WD40-rpts
Query 321 VIKGRKKTVQEIFHEHATHLRILREHTDSDALVESRVPQQLRQNLMANFRNGSRHAPYFLCGADGSGKSAILCHLYGQVG 400
WD40-rpts
Query 401 SWFGSTRVHRVIRFAKATPRSAYNLELLRVICQQISIIFNIPEGYLPKDASFDPLYINTWFQNLLRRVEDMGNDVLFLFI 480
WD40-rpts
Query 481 DDLHLLNPLDCDIVTALSWLPTSLPWNVQIICSSTTPVEQLKFTPMQRDRFKSIEYQFDLNMGDYATKLKIPPQCIPGDV 560
WD40-rpts
Query 561 SFALYVEQQFDQLERHYGRQAVGDLASYITCSEYGLSETELLELLMPTDDPESLIETKNGHFSFATFKKIHREMDLLLLL 640
WD40-rpts
Query 641 HDKIMSGKVLIQWRHNYCASVAKRRYMDVQRTRSLHCELANLFFPQDEDESTLENESNRSESKSVISLKDRDREKDSLSA 720
WD40-rpts
Query 721 VSAVSAGRKSSSTHHNDDTSTFYNPIAADVSYSMRHVEESWHHLMRSDDTTRFKQIAVCNFDFLLAAVQTVSISYLRCLI 800
WD40-rpts
Query 801 EHVRCYILDRDIELIYYTIRKSSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLLVPLTGW 880
WD40-rpts
Query 881 LPAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPQSDSELLLTGS 960
WD40-rpts (_____________WD 1_____________) (__________________WD 2_________
Query 961 EDATVLVWHVGLRERRAHIKNAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDV 1040
WD40-rpts ________)(___________________WD 3__________________) (_________________WD 4___
Query 1041 LISGGLDRTICVWDLDNFTLLNTMQMTSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKD 1120
WD40-rpts _____________)(__________________WD 5_________________) (_________________WD 6
Query 1121 SQRCVVGCDDTRALIYDMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNKITFYSFRNEELYVNPYSRHPRRKRSLK 1200
WD40-rpts ________________) (________________WD 7________________)
Query 1201 RHAQAQRSPSTTLPPITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHI 1280
WD40-rpts (________________WD 8________________) (_________________WD 9_______________
Query 1281 WNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLSVTNNMRFAVSTNGDNTLK 1360
WD40-rpts _) (_________________WD10________________) (_______________WD11_____________
Query 1361 IWSLTQEDEKYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTQVLSGSKD 1440
WD40-rpts __) (_________________WD12________________) (_________________WD13___________
Query 1441 MNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQMHVPFTHFDISLEVSRVLVQ 1520
WD40-rpts ______) (_________________WD14________________) (_________________WD15______
Query 1521 LVDSYNLPVICLHNTPAQYVKLPTYSGPSKDVEDLRPQGPKRQMKRLLKKEVSLDTYTWQKKYGHLTSSVMMAQVDERLK 1600
WD40-rpts __________) (_____________________WD16____________________)(________________WD1
Query 1601 RRFSVSASMEEISKIAETKTGASQANLGPEQAALAQSQHFDQLEALWNKRSPPRRRHNAGLSRQTSLVEDRLESSDDDEY 1680
WD40-rpts 7_______________)
Query 1681 QDERADHFASGGGGYHKG 1698
WD40-rpts
 17 WD40-repeats found in QUERY=FBpp0085900 (Len=1698): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 894-925 5.54 343.50 0.00146 15.0% 46.36 WD 2: Seg 16 929-969 8.09 448.67 5.6e-05 37.5% 56.06 WD 3: Seg 20 970-1012 8.07 448.02 5.7e-05 27.5% 57.30 WD 4: Seg 24 1016-1054 8.63 470.99 2.8e-05 30.0% 56.62 WD 5: Seg 28 1055-1095 5.87 357.01 0.00096 22.5% 56.43 WD 6: Seg 32 1099-1137 9.32 499.54 1.2e-05 37.5% 57.19 WD 7: Seg 36 1141-1178 6.24 372.36 0.00060 22.5% 57.31 WD 8: Seg 41 1203-1240 4.68 307.93 0.00440 15.0% 42.73 WD 9: Seg 44 1244-1282 9.90 523.69 5.4e-06 42.5% 56.91 WD10: Seg 48 1286-1324 8.96 484.72 1.8e-05 32.5% 56.22 WD11: Seg 52 1328-1363 6.57 385.96 0.00039 30.0% 53.68 WD12: Seg 56 1366-1404 8.29 457.13 4.3e-05 30.0% 54.52 WD13: Seg 60 1408-1447 8.18 452.50 5.0e-05 37.5% 56.27 WD14: Seg 64 1451-1489 9.93 524.98 5.2e-06 47.5% 57.48 WD15: Seg 68 1493-1531 3.55 261.18 0.01866 22.5% 53.80 WD16: Seg 72 1534-1580 4.88 316.17 0.00341 22.5% 42.70 WD17: Seg 76 1581-1617 3.78 270.98 0.01380 17.5% 39.65Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 894-925 VS----------------GTGCIRAVWLA---P--SKQ-HLILATSSG-DVQQWH WD 2 929-969 -N---S-L----DHIFKGHTAAVTCLLVA---PQSDSE-LLLTGSEDA-TVLVWH WD 3 970-1012 VGLRER-R----AHIKNAHTAPITGVAAG---A--NNT-LIISSSEDA-SIAITD WD 4 1016-1054 -G---K-L----RHRITHHRGPVSGIVVA---G--ACD-VLISGGLDR-TICVWD WD 5 1055-1095 LD---NFT----LLNTMQMTSAVLRIDIS---W--NSV-FLLALCEDN-ALYVRT WD 6 1099-1137 -G---K-E----LHTLKGHKSKIRSISIG---K--DSQ-RCVVGCDDT-RALIYD WD 7 1141-1178 -G---K-L----VRSLPPNPGPVTAVHAM---D--NDD-FLVTVGGN--KITFYS WD 8 1203-1240 -A---Q-A----QRSPSTTLPPITCFDLS---R--DSQ-QMAIAS-GR-HVHLMR WD 9 1244-1282 -P---E-Y----QCTLEGHTAGVSCLKFA---P--NGE-FLATGSEDR-LVHIWN WD10 1286-1324 -G---E-I----CNSFKGHTAPVVKVVVL---M--DSL-RVISTDRDS-MLLVWM WD11 1328-1363 -G---N-L----LQTIQGP---YKSLSVT---N--NMR-FAVSTNGDN-TLKIWS WD12 1366-1404 -Q---E-D----EKYSVSHSDEITCFEIS---A--DSV-HIISGSRDM-SLKVWQ WD13 1408-1447 -G---K-L----SQVLVGHSDAVTCVAVS---V--TNKTQVLSGSKDM-NLILWD WD14 1451-1489 -G---E-E----VHTLAGHLGPVIGVKVS---A--DGS-TAVSGSDDK-TLIVWE WD15 1493-1531 -G---L-A----LTSLQMHVP-FTHFDIS---L--EVS-RVLVQLVDSYNLPVIC WD16 1534-1580 NT---P-AQYVKLPTYSGPSKDVEDLRPQGPKR--QMK-RLLKKEVSL-DTYTWQ WD17 1581-1617 KK---Y-G----HLTSSVMMA---QVDER---L--KRR-FSVSASMEE-ISKIAE WD40 Template TG---E-C----LRTLSGHTSGVTSVSFS---P--DGK-RLVSGSEDG-TIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |