Input parameters:

  Query = FBpp0085899 (Len=1922)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085899, Len=1922):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPIDESVLNALRGVTSAHTRLPKPLLIKIYVASLKQEFNQERRMLLELVGPELQSLYDDRQIELEFVDMHFGTGDLEV 80  
WD40-rpts                                                                                      

Query       81 HQLERDPYLIHDYLHEIDTCHAHTKSVFFMVLVGDGIGRQLLPTKIDEDIFSAVLADQQTSADHEAMLVKWYERDASQTQ 160 
WD40-rpts                                                                                      

Query      161 RQLKQDYRLMNVDAWLAESQRMQSFLEQAFQSLLQGSGASGRSPDFMERVQLLRRTQIEREVSQAMALTSEKILAVFRER 240 
WD40-rpts                                                                                      

Query      241 AAQCSKGDVEAAERLRKIKDELTMNLSTDNHTTLVVPGSAASEAIDPDNEDHESYLSKFKNKVTDKLRLLIEAHITNDPD 320 
WD40-rpts                                                                                      

Query      321 VIKGRKKTVQEIFHEHATHLRILREHTDSDALVESRVPQQLRQNLMANFRNGSRHAPYFLCGADGSGKSAILCHLYGQVG 400 
WD40-rpts                                                                                      

Query      401 SWFGSTRVHRVIRFAKATPRSAYNLELLRVICQQISIIFNIPEGYLPKDASFDPLYINTWFQNLLRRVEDMGNDVLFLFI 480 
WD40-rpts                                                                                      

Query      481 DDLHLLNPLDCDIVTALSWLPTSLPWNVQIICSSTTPVEQLKFTPMQRDRFKSIEYQFDLNMGDYATKLKIPPQCIPGDV 560 
WD40-rpts                                                                                      

Query      561 SFALYVEQQFDQLERHYGRQAVGDLASYITCSEYGLSETELLELLMPTDDPESLIETKNGHFSFATFKKIHREMDLLLLL 640 
WD40-rpts                                                                                      

Query      641 HDKIMSGKVLIQWRHNYCASVAKRRYMDVQRTRSLHCELANLFFPQDEDESTLENESNRSESKSVISLKDRDREKDSLSA 720 
WD40-rpts                                                                                      

Query      721 VSAVSAGRKSSSTHHNDDTSTFYNPIAADVSYSMRHVEESWHHLMRSDDTTRFKQIAVCNFDFLLAAVQTVSISYLRCLI 800 
WD40-rpts                                                                                      

Query      801 EHVRCYILDRDIELIYYTIRKSSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLLVPLTGW 880 
WD40-rpts                                                                                      

Query      881 LPAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPQSDSELLLTGS 960 
WD40-rpts            (_________________WD 1________________)   (__________________WD 2_________

Query      961 EDATVLVWHVGLRERRAHIKNAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDV 1040
WD40-rpts      ________)(___________________WD 3__________________)   (_________________WD 4___

Query     1041 LISGGLDRTICVWDLDNFTLLNTMQMTSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKD 1120
WD40-rpts      _____________)   (________________WD 5________________)   (_________________WD 6

Query     1121 SQRCVVGCDDTRALIYDMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNKITFYSFRNEELYVNPYSRHPRRKRSLK 1200
WD40-rpts      ________________)   (________________WD 7________________)                      

Query     1201 RHAQAQRSPSTTLPPITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHI 1280
WD40-rpts        (________________WD 8________________)   (_________________WD 9_______________

Query     1281 WNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLSVTNNMRFAVSTNGDNTLK 1360
WD40-rpts      _)   (_________________WD10________________)   (_______________WD11_____________

Query     1361 IWSLTQEDEKYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTQVLSGSKD 1440
WD40-rpts      __)  (_________________WD12________________)   (_________________WD13___________

Query     1441 MNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQMHVPFTHFDISLEVSRVLVQ 1520
WD40-rpts      ______)   (_________________WD14________________)   (_________________WD15______

Query     1521 LVDSYNLPVICLHNTPAQYVKLPTYSGPSKDVEDLRPQGPKRQMKRLLKKEVSLDTYTWQKKYGHLTSSVMMAQVDERLK 1600
WD40-rpts      __________)  (_____________________WD16____________________)(________________WD1

Query     1601 RRFSVSASMEEISKIAETKTGASQANLGPEQAALAQSQHFDQLEALWNKRSPPRRRHNAGLSRQTSLVEDRLESSDDDEY 1680
WD40-rpts      7_______________)                                                               

Query     1681 QDERAGMLSASYDNIHHLARLPGLRSLHDAWKTNSLRVPSRSARTKFYVSTPPPQNSQNSSSLRLDSHVPGQFTDGVVAP 1760
WD40-rpts                                                                                      

Query     1761 DLVRDLLSVPPTVESPQRISLRQLLHWPSLKSRIWRRQRNCQSLQPNIRLNPPERLRPTPIIVVENYDVRRVQQLRTDLI 1840
WD40-rpts                                                                                      

Query     1841 LHPQTSRASVGHIEVAGSEHLLAKKANYWQRRWHLLRHKAASTTTTTTSRSESSHPHRDSMNSHSNNSTPDPTANCNDCV 1920
WD40-rpts                                                                                      

Query     1921 AQ 1922
WD40-rpts        

17 WD40-repeats found in QUERY=FBpp0085899 (Len=1922):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   887-925      6.45  380.98  0.00046       15.0%     53.45
  WD 2:  Seg 18   929-969      8.22  454.28  4.7e-05       37.5%     55.98
  WD 3:  Seg 22   970-1012     8.36  460.00  3.9e-05       27.5%     56.60
  WD 4:  Seg 26  1016-1054     8.69  473.50  2.6e-05       30.0%     56.45
  WD 5:  Seg 30  1058-1095     6.15  368.79  0.00067       22.5%     56.00
  WD 6:  Seg 34  1099-1137     9.23  495.73  1.3e-05       37.5%     56.27
  WD 7:  Seg 38  1141-1178     6.18  370.06  0.00064       22.5%     57.34
  WD 8:  Seg 43  1203-1240     4.69  308.55  0.00432       15.0%     42.89
  WD 9:  Seg 46  1244-1282     9.82  520.12  6.1e-06       42.5%     57.14
  WD10:  Seg 50  1286-1324     8.88  481.38  2.0e-05       32.5%     56.39
  WD11:  Seg 54  1328-1363     6.76  394.10  0.00030       30.0%     53.28
  WD12:  Seg 58  1366-1404     8.30  457.47  4.2e-05       30.0%     54.36
  WD13:  Seg 62  1408-1447     8.23  454.70  4.6e-05       37.5%     56.57
  WD14:  Seg 66  1451-1489    10.02  528.68  4.7e-06       47.5%     57.98
  WD15:  Seg 70  1493-1531     3.56  261.72  0.01835       22.5%     54.32
  WD16:  Seg 74  1534-1580     4.75  310.75  0.00403       22.5%     39.46
  WD17:  Seg 78  1581-1617     3.74  269.11  0.01462       17.5%     42.79

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  887-925    -S---QI----RTMTVSGTGCIRAVWLA---P--SKQ-HLILATSSG-DVQQWH
   WD 2  929-969    -N---SL----DHIFKGHTAAVTCLLVA---PQSDSE-LLLTGSEDA-TVLVWH
   WD 3  970-1012   VGLRERR----AHIKNAHTAPITGVAAG---A--NNT-LIISSSEDA-SIAITD
   WD 4 1016-1054   -G---KL----RHRITHHRGPVSGIVVA---G--ACD-VLISGGLDR-TICVWD
   WD 5 1058-1095   -F---TL----LNTMQMT-SAVLRIDIS---W--NSV-FLLALCEDN-ALYVRT
   WD 6 1099-1137   -G---KE----LHTLKGHKSKIRSISIG---K--DSQ-RCVVGCDDT-RALIYD
   WD 7 1141-1178   -G---KL----VRSLPPNPGPVTAVHAM---D--NDD-FLVTVGGN--KITFYS
   WD 8 1203-1240   -A---QA----QRSPSTTLPPITCFDLS---R--DSQ-QMAIAS-GR-HVHLMR
   WD 9 1244-1282   -P---EY----QCTLEGHTAGVSCLKFA---P--NGE-FLATGSEDR-LVHIWN
   WD10 1286-1324   -G---EI----CNSFKGHTAPVVKVVVL---M--DSL-RVISTDRDS-MLLVWM
   WD11 1328-1363   -G---NL----LQTIQGP---YKSLSVT---N--NMR-FAVSTNGDN-TLKIWS
   WD12 1366-1404   -Q---ED----EKYSVSHSDEITCFEIS---A--DSV-HIISGSRDM-SLKVWQ
   WD13 1408-1447   -G---KL----SQVLVGHSDAVTCVAVS---V--TNKTQVLSGSKDM-NLILWD
   WD14 1451-1489   -G---EE----VHTLAGHLGPVIGVKVS---A--DGS-TAVSGSDDK-TLIVWE
   WD15 1493-1531   -G---LA----LTSLQMHVP-FTHFDIS---L--EVS-RVLVQLVDSYNLPVIC
   WD16 1534-1580   NT---PAQYVKLPTYSGPSKDVEDLRPQGPKR--QMK-RLLKKEVSL-DTYTWQ
   WD17 1581-1617   KK---YG----HLTSSVM---MAQVDER---L--KRR-FSVSASMEE-ISKIAE

   WD40 Template    TG---EC----LRTLSGHTSGVTSVSFS---P--DGK-RLVSGSEDG-TIKVWD