Input parameters:

  Query = FBpp0085897 (Len=1701)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085897, Len=1701):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPIDESVLNALRGVTSAHTRLPKPLLIKIYVASLKQEFNQERRMLLELVGPELQSLYDDRQIELEFVDMHFGTGDLEV 80  
WD40-rpts                                                                                      

Query       81 HQLERDPYLIHDYLHEIDTCHAHTKSVFFMVLVGDGIGRQLLPTKIDEDIFSAVLADQQTSADHEAMLVKWYERDASQTQ 160 
WD40-rpts                                                                                      

Query      161 RQLKQDYRLMNVDAWLAESQRMQSFLEQAFQSLLQGSGASGRSPDFMERVQLLRRTQIEREVSQAMALTSEKILAVFRER 240 
WD40-rpts                                                                                      

Query      241 AAQCSKGDVEAAERLRKIKDELTMNLSTDNHTTLVVPGSAASEAIDPDNEDHESYLSKFKNKVTDKLRLLIEAHITNDPD 320 
WD40-rpts                                                                                      

Query      321 VIKGRKKTVQEIFHEHATHLRILREHTDSDALVESRVPQQLRQNLMANFRNGSRHAPYFLCGADGSGKSAILCHLYGQVG 400 
WD40-rpts                                                                                      

Query      401 SWFGSTRVHRVIRFAKATPRSAYNLELLRVICQQISIIFNIPEGYLPKDASFDPLYINTWFQNLLRRVEDMGNDVLFLFI 480 
WD40-rpts                                                                                      

Query      481 DDLHLLNPLDCDIVTALSWLPTSLPWNVQIICSSTTPVEQLKFTPMQRDRFKSIEYQFDLNMGDYATKLKIPPQCIPGDV 560 
WD40-rpts                                                                                      

Query      561 SFALYVEQQFDQLERHYGRQAVGDLASYITCSEYGLSETELLELLMPTDDPESLIETKNGHFSFATFKKIHREMDLLLLL 640 
WD40-rpts                                                                                      

Query      641 HDKIMSGKVLIQWRHNYCASVAKRRYMDVQRTRSLHCELANLFFPQDEDESTLENESNRSESKSVISLKDRDREKDSLSA 720 
WD40-rpts                                                                                      

Query      721 VSAVSAGRKSSSTHHNDDTSTFYNPIAADVSYSMRHVEESWHHLMRSDDTTRFKQIAVCNFDFLLAAVQTVSISYLRCLI 800 
WD40-rpts                                                                                      

Query      801 EHVRCYILDRDIELIYYTIRKSSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLLVPLTGW 880 
WD40-rpts                                                                                      

Query      881 LPAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPQSDSELLLTGS 960 
WD40-rpts                   (_____________WD 1_____________)   (__________________WD 2_________

Query      961 EDATVLVWHVGLRERRAHIKNAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDV 1040
WD40-rpts      ________)(___________________WD 3__________________)   (_________________WD 4___

Query     1041 LISGGLDRTICVWDLDNFTLLNTMQMTSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKD 1120
WD40-rpts      _____________)(__________________WD 5_________________)   (_________________WD 6

Query     1121 SQRCVVGCDDTRALIYDMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNKITFYSFRNEELYVNPYSRHPRRKRSLK 1200
WD40-rpts      ________________)   (________________WD 7________________)                      

Query     1201 RHAQAQRSPSTTLPPITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHI 1280
WD40-rpts        (________________WD 8________________)   (_________________WD 9_______________

Query     1281 WNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLSVTNNMRFAVSTNGDNTLK 1360
WD40-rpts      _)   (_________________WD10________________)   (_______________WD11_____________

Query     1361 IWSLTQEDEKYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTQVLSGSKD 1440
WD40-rpts      __)  (_________________WD12________________)   (_________________WD13___________

Query     1441 MNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQMHVPFTHFDISLEVSRVLVQ 1520
WD40-rpts      ______)   (_________________WD14________________)   (_________________WD15______

Query     1521 LVDSYNLPVICLHNTPAQYVKLPTYSGPSKDVEDLRPQGPKRQMKRLLKKEVSLDTYTWQKKYGHLTSSVMMAQVDERLK 1600
WD40-rpts      __________)  (_____________________WD16____________________)(________________WD1

Query     1601 RRFSVSASMEEISKIAETKTGASQANLGPEQAALAQSQHFDQLEALWNKRSPPRRRHNAGLSRQTSLVEDRLESSDDDEY 1680
WD40-rpts      7_______________)                                                               

Query     1681 QDERAATAHSSKTSSRSSLLP 1701
WD40-rpts                           

17 WD40-repeats found in QUERY=FBpp0085897 (Len=1701):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   894-925      5.49  341.64  0.00155       15.0%     46.67
  WD 2:  Seg 16   929-969      8.34  459.02  4.0e-05       37.5%     56.03
  WD 3:  Seg 20   970-1012     8.13  450.58  5.3e-05       27.5%     57.02
  WD 4:  Seg 24  1016-1054     8.81  478.61  2.2e-05       30.0%     56.05
  WD 5:  Seg 28  1055-1095     5.91  358.90  0.00091       22.5%     56.31
  WD 6:  Seg 32  1099-1137     9.29  498.58  1.2e-05       37.5%     57.06
  WD 7:  Seg 36  1141-1178     6.15  368.65  0.00067       22.5%     56.84
  WD 8:  Seg 41  1203-1240     4.67  307.53  0.00446       15.0%     43.48
  WD 9:  Seg 44  1244-1282    10.12  532.50  4.1e-06       42.5%     56.80
  WD10:  Seg 48  1286-1324     8.89  481.81  2.0e-05       32.5%     56.57
  WD11:  Seg 52  1328-1363     6.46  381.35  0.00045       30.0%     53.62
  WD12:  Seg 56  1366-1404     8.35  459.38  4.0e-05       30.0%     55.48
  WD13:  Seg 60  1408-1447     8.27  456.45  4.4e-05       37.5%     56.23
  WD14:  Seg 64  1451-1489     9.91  524.15  5.4e-06       47.5%     57.82
  WD15:  Seg 68  1493-1531     3.51  259.71  0.01952       22.5%     53.80
  WD16:  Seg 72  1534-1580     4.49  300.28  0.00558       22.5%     41.14
  WD17:  Seg 76  1581-1617     3.61  263.97  0.01712       15.0%     41.61

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  894-925    VS----------------GTGCIRAVWLA---P--SKQ-HLILATSSG-DVQQWH
   WD 2  929-969    -N---S-L----DHIFKGHTAAVTCLLVA---PQSDSE-LLLTGSEDA-TVLVWH
   WD 3  970-1012   VGLRER-R----AHIKNAHTAPITGVAAG---A--NNT-LIISSSEDA-SIAITD
   WD 4 1016-1054   -G---K-L----RHRITHHRGPVSGIVVA---G--ACD-VLISGGLDR-TICVWD
   WD 5 1055-1095   LD---NFT----LLNTMQMTSAVLRIDIS---W--NSV-FLLALCEDN-ALYVRT
   WD 6 1099-1137   -G---K-E----LHTLKGHKSKIRSISIG---K--DSQ-RCVVGCDDT-RALIYD
   WD 7 1141-1178   -G---K-L----VRSLPPNPGPVTAVHAM---D--NDD-FLVTVGGN--KITFYS
   WD 8 1203-1240   -A---Q-A----QRSPSTTLPPITCFDLS---R--DSQ-QMAIAS-GR-HVHLMR
   WD 9 1244-1282   -P---E-Y----QCTLEGHTAGVSCLKFA---P--NGE-FLATGSEDR-LVHIWN
   WD10 1286-1324   -G---E-I----CNSFKGHTAPVVKVVVL---M--DSL-RVISTDRDS-MLLVWM
   WD11 1328-1363   -G---N-L----LQTIQGP---YKSLSVT---N--NMR-FAVSTNGDN-TLKIWS
   WD12 1366-1404   -Q---E-D----EKYSVSHSDEITCFEIS---A--DSV-HIISGSRDM-SLKVWQ
   WD13 1408-1447   -G---K-L----SQVLVGHSDAVTCVAVS---V--TNKTQVLSGSKDM-NLILWD
   WD14 1451-1489   -G---E-E----VHTLAGHLGPVIGVKVS---A--DGS-TAVSGSDDK-TLIVWE
   WD15 1493-1531   -G---L-A----LTSLQMHVP-FTHFDIS---L--EVS-RVLVQLVDSYNLPVIC
   WD16 1534-1580   NT---P-AQYVKLPTYSGPSKDVEDLRPQGPKR--QMK-RLLKKEVSL-DTYTWQ
   WD17 1581-1617   KK---Y-G----HLT---SSVMMAQVDER---L--KRR-FSVSASMEE-ISKIAE

   WD40 Template    TG---E-C----LRTLSGHTSGVTSVSFS---P--DGK-RLVSGSEDG-TIKVWD