Input parameters:

  Query = FBpp0085689 (Len=1366)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085689, Len=1366):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFEKILYKYEEPHGIGDVYFIWQKALLATTGTDGSVALYNRQGQLVQRIILSGLCSGFAWDQEGDLLGIITSGSPNITL 80  
WD40-rpts       (_________________WD 1_________________)(__________________WD 2________________

Query       81 WDYNSQEKISVETGLRDPLTCILWSKQQQLLAVGTGRGNLAIYNHSSGKRPTPVLGKHSKRITCGAWSAQNLLALGSEDK 160 
WD40-rpts      _)   (_________________WD 3________________)(__________________WD 4_____________

Query      161 SFSLSNEDGDTVRVVQLRDAPTDMYFAEMANDERIAGDNAISMIIGKRTLFLYYLPEPENPTELGFQSRYGSLMQHKWFG 240 
WD40-rpts      _____)                                                (___________________WD 5__

Query      241 DGYILLGFSNGHVVAISTHPKDVGQELWQVKNHKDSLTGLAYCPTLDIVASCGDDSIKIHSITNLQETERIITVPDHAGV 320 
WD40-rpts      _________________)     (________________WD 6________________)      (____________

Query      321 QMIDWSPDGQLLAVTTNHGTVYIYVTKLPHLFAVSAPRIVLLSSLAEVSIYVYAPDKTKSLPFRLPLEGEPTFMAVGPYN 400 
WD40-rpts      ____WD 7________________)                                                       

Query      401 FATGIEKHVWFYDLGKSLGEEPRPLSERDFPRSVESMKLNADYCAALCPPQLILQAIAADNPNCKDKLQAVFPTALPNMP 480 
WD40-rpts                                                                           (__________

Query      481 SDAVITCFALSQELLIFATDIGHLVFYSLEKWDSCTIYRHSMGIRQLFMDIEGTKVIFIDDHSQGYVFLPVVEEALLIPD 560 
WD40-rpts      _______WD 8________________)(__________________WD 9_________________)           

Query      561 IPKQCLGCLWDLTQPNIFISYDARIVNTHVFVRHSVQGTHTLMVGESKLNPGQFPLLLCGGEMALHIDGGQYATQSLSTH 640 
WD40-rpts                                                                                      

Query      641 VVNPSNSQAANLQMLLKLRNYDEAYKLCKQMNQSSAWREFGEQAISDLEPDIAIRAYRQLGDAALVNALSELRYVEDLDM 720 
WD40-rpts                                                                                      

Query      721 LIGCCCTLLAQYDQAKEHMLKGVYTRAALDLCRDLLQWDQALLLAHKNDPQEVPYIAREYAQQLEFNGNYTDALYHYEKG 800 
WD40-rpts                                                                                      

Query      801 YKEDLINSKETETDALMDSSPEYEEHVRLCKMGIARTSIRAGDFRRGIQYAVELEDQQLLFDCAELLATVGHLTEAAGLY 880 
WD40-rpts                                                                                      

Query      881 ERGGFYDEACGHYIALKMWNKANNILPKVKSTKLHAAYAKAKENDGHYEEAIRSYRIAGDLDACVRIYLDHLCDPHAASE 960 
WD40-rpts                                                                                      

Query      961 IVLESRSMDSAKLLAKFYQKIGDVEQALQFLVICGCVEEAFALAQRHNKLRRHGELLERYENAKSSDYLALAHYFEGEKY 1040
WD40-rpts                                                                                      

Query     1041 TLLAGKYYFLAREFTKALRFLLKASAFNNEEQVSLSLAIDCVATSNNEQLATQLIEFLLGEVDGVPKDPRYLFRLYMARK 1120
WD40-rpts                                                                                      

Query     1121 HYKDAAKTAVIIANQEQIAGNYKSARDLLYSMYQELRRNNLSVTAEMRHQFILLHRYTLVRIHVKLGNHLLAAKLLVQVA 1200
WD40-rpts                                                                                      

Query     1201 ACISQFPEHIIPILTSTVIECHRAGLKKSAFTYASTLMRPDYRNQLDPRYAKKIESIVRKAPKGIKQLRDEIDGETMECP 1280
WD40-rpts                                                                                      

Query     1281 ICDSNLANMEVTCYSCKTTLPICIATGQHIIKQLMTSCPQCDFLCFRAEMENILSENGECPMCGENVAPEQLLDVEDIRP 1360
WD40-rpts                                                                                      

Query     1361 YILAAS 1366
WD40-rpts            

9 WD40-repeats found in QUERY=FBpp0085689 (Len=1366):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       6.08  365.68  0.00073       17.5%     55.45
  WD 2:  Seg  5    42-82       4.60  304.80  0.00485       17.5%     55.62
  WD 3:  Seg  9    86-124      6.59  386.78  0.00038       17.5%     54.34
  WD 4:  Seg 13   125-166      5.00  321.38  0.00290       25.0%     45.25
  WD 5:  Seg 20   215-258      4.12  284.98  0.00895       12.5%     46.88
  WD 6:  Seg 24   264-301      5.36  336.13  0.00184       22.5%     54.63
  WD 7:  Seg 28   308-345      5.66  348.28  0.00126       30.0%     50.71
  WD 8:  Seg 40   470-508      4.62  305.70  0.00472       12.5%     45.15
  WD 9:  Seg 43   509-549      4.43  297.50  0.00608       12.5%     54.24

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     SFE----KIL---YKYEEPHGIGDVYFIWQKALLAT-TGTDGSVALYN
   WD 2   42-82     RQG----QLV---QRIILSGLCSGFAWDQEGDLLGIITSGSPNITLWD
   WD 3   86-124    -QE----KIS---VETGLRDPLTCILWSKQQQLLAV-GTGRGNLAIYN
   WD 4  125-166    HSS----GKRPTPVLGKHSKRITCGAWSAQN-LLAL-GSEDKSFSLSN
   WD 5  215-258    LPEPENPTEL---GFQSRYGSLMQHKWFGDGYILLG-FSNGHVVAIST
   WD 6  264-301    -GQ----ELW---QVKNHKDSLTGLAYCPTLDIVAS-CG-DDSIKIHS
   WD 7  308-345    -TE----RII---TVPDH-AGVQMIDWSPDGQLLAV-TTNHGTVYIYV
   WD 8  470-508    -AV----FPT---ALPNMPSDAVITCFALSQELLIF-ATDIGHLVFYS
   WD 9  509-549    LEK---WDSC---TIYRHSMGIRQLFMDIEGTKVIF-IDDHSQGYVFL

   WD40 Template    TGE----CLR---TLSGHTSGVTSVSFSPDGKRLVS-GSEDGTIKVWD