Input parameters:

  Query = FBpp0085564 (Len=1235)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085564, Len=1235):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSQVMYHNVPTPPGNVSLAAAAPDGGLLYAGIRCINYISAPPANGEQPQVVTMSTRINILALDVSPMWGLGNGGPTKPF 80  
WD40-rpts        (_________________WD 1_________________)            (_________________WD 2____

Query       81 AIVGDDLSVQVWDCALGEAVIGHKAHQHQHEARDVRVVHHTTNSVLMSYLANGNILSMDASDLVIYCVASNTYCRRSTFI 160 
WD40-rpts      ____________)      (______________________WD 3______________________)    (______

Query      161 SPRNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDLRKMNIVYKFHGHKAPICGLAWREVPAAEDEKTNNLALSAEEWRSRN 240 
WD40-rpts      ___________WD 4_________________)   (__________________WD 5_________________)   

Query      241 GGQEEKPKTKPPPLTKSKAAESDDPFDIYNFDHLEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGAAVLDFVEACESVKA 320 
WD40-rpts                                                                                      

Query      321 ELLASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISNKNDASDSTEGSLEVIQYSSSSDDAVIVDGEAAKPKREVLHHI 400 
WD40-rpts                        (______________________WD 6______________________)            

Query      401 YHQAEVHASGTPQTKSEPQSNLQVVPAISAETISLTSVNSTHLETLLVSIDGDEVMMIWNTNTGAHAGKNYSKSKTAGKL 480 
WD40-rpts                           (_________________WD 7________________)(___________________

Query      481 NNVYWLNNHVIVSLSRHQLFFWSVEFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMA 560 
WD40-rpts      WD 8__________________)            (________________WD 9________________)   (___

Query      561 DFYGTVAFGVRAMAECPDDMNKIALGCSDRRVAFFDISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFGTFDGTVGIL 640 
WD40-rpts      ______________WD10_________________)(____________________WD11___________________

Query      641 DVERMKVKTHLRTPHKKEVYSLVWQDHFIYFIVNRVLGFFDLRKSKIEPTIVNCISRPSYLSIRDSFLFVGTDDGLLQIH 720 
WD40-rpts      )(___________________WD12__________________)(________________WD13_______________

Query      721 ERDSGMEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVSGNDRSVYVMEFQPTERNWKTLHTFTANTEKASITSMRWSH 800 
WD40-rpts      )         (_________________WD14_________________)(______________________WD15___

Query      801 TQKHLLLTFHIEGKVCLWNCNAPEKPPLTITYHCPMWCGMFLPTNENIIMCSGKALSVELIDIKDALEGDEKSICPKVDA 880 
WD40-rpts      __________________)   (_________________WD16_________________)                  

Query      881 LLNVKWASKSLTQPYAPVLTAAEKKRQRRDQRKAAAKLEVDVANKDQKKIQESVTAVIDNPTNDKCTQETPVEEMLEALS 960 
WD40-rpts                                                                                      

Query      961 LDKEQNNRSAKECPKCKEQSPDSFTHSRTCLYLTQKELNKSALEKLAIVLTEDSAKIDKSVLISKLFSSKVMAKELIATE 1040
WD40-rpts                                                                                      

Query     1041 LTNLKHSNTKDIAPLCLAMSTFKLREELEQHIANKTLTERHVSLAPSVSFTLWQDCCRAYAKQMEEKGYIMHAATYLFSQ 1120
WD40-rpts                                                                                      

Query     1121 GMQSEAIKLFLANEYYKEALVHARICLPATDPLIKTVINNWLEHLEGTGNFAAAALICVLDNEMLRGYSYLRKYRNCTPE 1200
WD40-rpts                                                                                      

Query     1201 IADLMDQIKRIGQLGGVLDGCAPNEPIHNGSTAEH 1235
WD40-rpts                                         

16 WD40-repeats found in QUERY=FBpp0085564 (Len=1235):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       5.05  323.23  0.00274       15.0%     26.66
  WD 2:  Seg  3    55-93       4.46  298.87  0.00583       17.5%     23.76
  WD 3:  Seg  6   100-149      4.25  290.10  0.00765       17.5%     32.97
  WD 4:  Seg 10   154-193      5.86  356.62  0.00097       22.5%     50.65
  WD 5:  Seg 14   197-237      3.95  277.62  0.01124        7.5%     30.91
  WD 6:  Seg 20   339-388      5.31  333.95  0.00196       20.0%     -3.49
  WD 7:  Seg 24   422-460      7.09  407.43  0.00020       25.0%     48.00
  WD 8:  Seg 27   461-503      3.92  276.52  0.01163        7.5%     42.59
  WD 9:  Seg 31   516-553      6.23  371.90  0.00061       10.0%     47.00
  WD10:  Seg 34   557-596      6.60  387.35  0.00037       20.0%     53.19
  WD11:  Seg 38   597-641      6.88  398.92  0.00026       25.0%     51.96
  WD12:  Seg 42   642-684      2.97  237.14  0.03895       10.0%     31.38
  WD13:  Seg 46   685-721      4.66  307.00  0.00453       17.5%     44.38
  WD14:  Seg 50   731-770      5.76  352.41  0.00111       17.5%     50.86
  WD15:  Seg 54   771-819      5.78  353.44  0.00107       20.0%     45.66
  WD16:  Seg 58   823-862      4.90  316.97  0.00333       10.0%     46.58

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     SQ----------V-----MYH----------NVPTPPGNVSLAAAA-P-DGGLLYA----GIRCINYISAP
   WD 2   55-93     -S----------T-----RIN----------ILALDVSPMWGLGNG-G-PTKPFAI----VGDDLSVQVWD
   WD 3  100-149    VI----------G-----HKAHQHQHEARDVRVVHHTTNSVLMSYL-A-NGNILSM----DASDLVIYCVA
   WD 4  154-193    -C----------R-----RST----------FISPRNHQLTMVRCS-PYNDNLFAV----GTAMGNVLVCD
   WD 5  197-237    -M----------N-----IVY----------KFHGHKAPICGLAWR-E-VPA--AEDEKTNNLALSAEEWR
   WD 6  339-388    HDCEPTKPTGPLS-----DAS----------TISNKNDASDSTEGS-L-EVIQYSS----SSDDAVIVDGE
   WD 7  422-460    -L----------Q-----VVP----------AISAETISLTSVNST-H-LETLLVS----IDGDEVMMIWN
   WD 8  461-503    TN-------TGAH-----AGK----------NYSKSKTAGKLNNVY-W-LNNHVIV----SLSRHQLFFWS
   WD 9  516-553    SK----------D-------K----------SHSCHLQDIVSFACD-S-SKEMIWL----CRNNRQIGMMN
   WD10  557-596    -G----------R-----MAD----------FYGTVAFGVRAMAEC-PDDMNKIAL----GCSDRRVAFFD
   WD11  597-641    IS----------KLTTSCLPI----------DSVYVSSNVYCLAWS-P-NCLELAF----GTFDGTVGILD
   WD12  642-684    VE----------R--MKVKTH----------LRTPHKKEVYSLVWQ-D-HFIYFIV----NRVLGFFDLRK
   WD13  685-721    -S----------K-----IEP----------TIVNCISRPSY--LS-I-RDSFLFV----GTDDGLLQIHE
   WD14  731-770    -S----------P-----FIR----------QSALFARYVTDIAWC-PLDSNKFAV----SGNDRSVYVME
   WD15  771-819    FQ----------P-----TER--NWKTLHTFTANTEKASITSMRWSHT-QKHLLLT----FHIEGKVCLWN
   WD16  823-862    -P----------E-----KPP----------LTITYHCPMWCGMFL-PTNENIIMC----SGKALSVELID

   WD40 Template    TG----------E-----CLR----------TLSGHTSGVTSVSFS-P-DGKRLVS----GSEDGTIKVWD