Input parameters:

  Query = FBpp0084831 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0084831, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPPEFKLNNPPEDLISAVKFGPKSNQYMAASSWDGTLRFYDVPANQLRQKFVQDAPLLDCAFMDIVHVVSGSLDNQLRL 80  
WD40-rpts       (__________________WD 1_________________)  (________________WD 2_______________

Query       81 FDVNTQAESIIGAHEEPIRCVEHAEYVNGILTGSWDNTVKLWDMREKRCVGTFEQNNGKVYSMSVIDEKIVVATSDRKVL 160 
WD40-rpts      _)(__________________WD 3_________________)   (________________WD 4_____________

Query      161 IWDLRKMDSYIMKRESSLKYQTRCIRLFPNKEGYVMSSIEGRVAVEYLDHDPEVQRRKFAFKCHRNREQNIEQIYPVNAL 240 
WD40-rpts      __)(___________________WD 5___________________)               (_________________

Query      241 SFHNVYQTFATGGSDGIVNIWDGFNKKRLCQFHEYDTSISTLNFSSDGSALAIGCSYLDQLPETPATVPHPAIYIRYPTD 320 
WD40-rpts      WD 6_________________)   (_________________WD 7________________)                

Query      321 QETKQK 326 
WD40-rpts            

7 WD40-repeats found in QUERY=FBpp0084831 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-42       7.89  440.68  7.2e-05       20.0%     54.27
  WD 2:  Seg  5    45-82       5.25  331.55  0.00212       25.0%     56.44
  WD 3:  Seg  9    83-123      8.90  482.46  2.0e-05       22.5%     52.85
  WD 4:  Seg 13   127-163      7.03  404.87  0.00022       22.5%     52.42
  WD 5:  Seg 17   164-207      7.12  408.70  0.00019       15.0%     53.86
  WD 6:  Seg 22   223-262      8.37  460.59  3.9e-05       20.0%     37.76
  WD 7:  Seg 25   266-304      7.60  428.47  0.00010       17.5%     38.45

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-42     RP-P----EFKLNNPPEDLISAVKFGPKSNQYMAASSWDGTLRFYD
   WD 2   45-82     -A-N----QLRQKFVQDAPLLDCAFM-D-IVHVVSGSLDNQLRLFD
   WD 3   83-123    VNTQ----AESIIGAHEEPIRCVEHAEY-VNGILTGSWDNTVKLWD
   WD 4  127-163    -K-R----CVGTFEQNNGKVYSMSVIDE-K--IVVATSDRKVLIWD
   WD 5  164-207    LR-KMDSYIMKRESSLKYQTRCIRLFPN-KEGYVMSSIEGRVAVEY
   WD 6  223-262    CH-R----NREQNIEQIYPVNALSFHNV-YQTFATGGSDGIVNIWD
   WD 7  266-304    -K-K----RLCQFHEYDTSISTLNFSSD-GSALAIGCSYLDQLPET

   WD40 Template    TG-E----CLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD