Input parameters:

  Query = FBpp0084338 (Len=719)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0084338, Len=719):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPSPVRHPAAGGPPPQGPIKFTIADTLERIKEEFNFLQAQYHSIKLECEKLSNEKTEMQRHYVMYYEMSYGLNVEMHKQ 80  
WD40-rpts                                                                                      

Query       81 TEIAKRLNTLINQLLPFLQADHQQQVLQAVERAKQVTMQELNLIIGQQIHAQQVPGGPPQPMGALNPFGALGATMGLPHG 160 
WD40-rpts                                                                                      

Query      161 PQGLLNKPPEHHRPDIKPTGLEGPAAAEERLRNSVSPADREKYRTRSPLDIENDSKRRKDEKLQEDEGEKSDQDLVVDVA 240 
WD40-rpts                                                                (_____________________

Query      241 NEMESHSPRPNGEHVSMEVRDRESLNGERLEKPSSSGIKQERPPSRSGSSSSRSTPSLKTKDMEKPGTPGAKARTPTPNA 320 
WD40-rpts      _WD 1______________________)                                                    

Query      321 AAPAPGVNPKQMMPQGPPPAGYPGAPYQRPADPYQRPPSDPAYGRPPPMPYDPHAHVRTNGIPHPSALTGGKPAYSFHMN 400 
WD40-rpts                                                                 (__________________WD

Query      401 GEGSLQPVPFPPDALVGVGIPRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNPVSQLDCLQRDN 480 
WD40-rpts       2_________________)   (________________WD 3_______________)(___________________

Query      481 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSKVCFSCCSDGNIAVWDLHNEILVRQ 560 
WD40-rpts      __WD 4____________________)     (_________________WD 5________________)   (_____

Query      561 FQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSHVEVLHASKPDK 640 
WD40-rpts      ____________WD 6________________)     (_______________WD 7_______________)(_____

Query      641 YQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDISTDDKYIVTGSGDKKATVYEVIY 719 
WD40-rpts      _____________WD 8_________________)(__________________WD 9_________________)   

9 WD40-repeats found in QUERY=FBpp0084338 (Len=719):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   219-268      4.64  306.19  0.00465       17.5%     -7.38
  WD 2:  Seg  4   380-420      2.99  238.10  0.03783       15.0%     22.68
  WD 3:  Seg  7   424-460      6.16  368.99  0.00066       32.5%     48.29
  WD 4:  Seg 11   461-507      7.64  430.39  9.8e-05       25.0%     48.30
  WD 5:  Seg 14   513-551      8.61  470.31  2.9e-05       30.0%     55.09
  WD 6:  Seg 18   555-593     10.25  537.99  3.5e-06       40.0%     52.98
  WD 7:  Seg 22   599-634      6.51  383.61  0.00042       20.0%     45.70
  WD 8:  Seg 25   635-675      8.44  463.24  3.6e-05       30.0%     54.29
  WD 9:  Seg 29   676-716      7.94  442.63  6.7e-05       35.0%     53.16

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  219-268    KDE-------KLQEDEGEKSDQDLVVDVANEMESHSPRPNGE-HVSMEVRDRESLNGE
   WD 2  380-420    NGI-------PHP----------SALTGGKPAYSFHMNGEGSLQPVPFPPDALVGVGI
   WD 3  424-460    -AR-------QIN----------TL-SHGEVVCAVTISNPTK-YVYTGG-KGCVKVWD
   WD 4  461-507    ISQPGNKNPVSQL----------DCLQRDNYIRSVKLLPDGR-TLIVGGEASNLSIWD
   WD 5  513-551    -PR-------IKA----------ELTSAAPACYALAISPDSK-VCFSCCSDGNIAVWD
   WD 6  555-593    -EI-------LVR----------QFQGHTDGASCIDISPDGS-RLWTGGLDNTVRSWD
   WD 7  599-634    QLQ-------QH--------------DFSSQIFSLGYCPTGD-WLAVGMENSHVEVLH
   WD 8  635-675    ASK------PDKY----------QLHLHESCVLSLRFAACGK-WFVSTGKDNLLNAWR
   WD 9  676-716    TPY------GASI----------FQSKETSSVLSCDISTDDK-YIVTGSGDKKATVYE

   WD40 Template    TGE-------CLR----------TLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD