Input parameters:

  Query = FBpp0083801 (Len=356)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0083801, Len=356):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSLLQEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALAELKGHQGPVWQVAWAHPKFGNILASCSYDR 80  
WD40-rpts               (_____________WD 1_____________)    (__________________WD 2____________

Query       81 KVIVWKSTTPRDWTKLYEYSNHDSSVNSVDFAPSEYGLVLACASSDGSVSVLTCNTEYGVWDAKKIPNAHTIGVNAISWC 160 
WD40-rpts      _____)      (__________________WD 3_________________)       (___________________

Query      161 PAQAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWREDNDRWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHV 240 
WD40-rpts      ______WD 4_________________________)(_____________________WD 5__________________

Query      241 IVWSSNADLSEWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRINYESGTAIQSKQPSHLPHSHS 320 
WD40-rpts      ___)(____________________WD 6___________________)   (________________WD 7_______

Query      321 QQQQALQQHQQQAPSHPGPSSDSEHSSNLSNSQLSN 356 
WD40-rpts      ________)                           

7 WD40-repeats found in QUERY=FBpp0083801 (Len=356):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-41       7.00  403.98  0.00022       20.0%     47.01
  WD 2:  Seg  4    46-86       8.15  451.25  5.2e-05       32.5%     54.75
  WD 3:  Seg  8    93-133      7.99  444.60  6.3e-05       37.5%     56.05
  WD 4:  Seg 12   141-196      7.13  409.32  0.00019       37.5%     50.74
  WD 5:  Seg 16   197-244      7.31  416.43  0.00015       22.5%     53.43
  WD 6:  Seg 20   245-289      8.26  455.67  4.5e-05       22.5%     54.05
  WD 7:  Seg 23   293-329      4.10  284.11  0.00920        5.0%     27.80

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-41     TE-------------HEDMVHHAALDFY----G-----------------LLLATCSSDGSVRIFH
   WD 2   46-86     -NK-----ALAELKGHQGPVWQVAWAHP--KFG-----------------NILASCSYDRKVIVWK
   WD 3   93-133    -WT-----KLYEYSNHDSSVNSVDFAPS--EYG-----------------LVLACASSDGSVSVLT
   WD 4  141-196    -WD-----AKKIPNAHTIGVNAISWCPA----QAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWR
   WD 5  197-244    EDN-DRWVEEHRLEAHSDWVRDVAWAPSIGLPR-----------------SQIATASQDRHVIVWS
   WD 6  245-289    SNADLSEWTSTVLHTFDDAVWSISWSTT----G-----------------NILAVTGGDNNVTLWK
   WD 7  293-329    -EG-----QWIRINYESGTAIQSKQ--P----S-----------------HLPHSHSQQQQALQQH

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSPD----G-----------------KRLVSGSEDGTIKVWD