Input parameters:

  Query = FBpp0083070 (Len=487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0083070, Len=487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKASKTRAVRLTSLTEDVAAVPEDAPFRARLHVLFAQIEREFEQLYLENQALQEKLDIATTTKESLIPPDARSAAGGSMS 80  
WD40-rpts                                                                             (________

Query       81 TQASSAALATPATQTDEVAGSFLAAASSTHKSLKAKLSSATGGSKAKASNKIKAQTSRIVSSFKAPTVVSTVVREFGGHK 160 
WD40-rpts      _________WD 1________________)        (______________WD 2______________)________

Query      161 DGIWQVAAKAGQPIIGTASADHTACIWGVESARCLLQYQGHAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPKK 240 
WD40-rpts      _______WD 3________________)   (_________________WD 4________________)          

Query      241 GHSSEEELDDSDEQVEDRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDRTAILWDVETGLPLQPLTGHD 320 
WD40-rpts            (___________________________WD 5___________________________)   (__________

Query      321 HELTHVSAHPTQRLVVTASRDTTFRLWDFREAIPAVSVFQGHTETVTSSVFARDDKVVSGSDDRTIKVWELRNMRSALAT 400 
WD40-rpts      _______WD 6________________)(__________________WD 7__________________)   (______

Query      401 IRTDSSVNRLAVSTGGIIAIPHDNRQIRLFDLNGQRVARLPRTSRQGHRRMVSSVAWAEEPLLDCDLFSCGFDRRVFGWS 480 
WD40-rpts      __________WD 8________________)(______________________WD 9_____________________)

Query      481 IVLPKDN 487 
WD40-rpts             

9 WD40-repeats found in QUERY=FBpp0083070 (Len=487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    72-110      5.05  323.46  0.00272        7.5%     17.88
  WD 2:  Seg  3   119-152      5.49  341.32  0.00156       15.0%     38.32
  WD 3:  Seg  5   150-188      8.64  471.61  2.7e-05       22.5%     52.07
  WD 4:  Seg  9   192-230      9.97  526.30  5.0e-06       32.5%     55.66
  WD 5:  Seg 14   247-306      7.32  417.14  0.00015       25.0%     41.32
  WD 6:  Seg 17   310-348      9.91  524.09  5.4e-06       37.5%     54.12
  WD 7:  Seg 21   349-390      8.69  473.47  2.6e-05       50.0%     45.46
  WD 8:  Seg 25   394-431      6.74  393.09  0.00031       15.0%     50.23
  WD 9:  Seg 29   432-480      6.47  381.91  0.00044       22.5%     40.07

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-110    -RS------A--------------------AGGSMSTQASSAALATPATQTD---EVAGSFLAAASSTH
   WD 2  119-152    --------------------------------SATGGSKAKASNKIKAQTSR---IVSSFKAPTVVSTV
   WD 3  150-188    -ST------V--------------------VREFGGHKDGIWQVAAKAGQPI---IGTASADHTACIWG
   WD 4  192-230    -AR------C--------------------LLQYQGHAGSVNSIKFHQQRDL---VLTGSGDGTAHIWQ
   WD 5  247-306    ELD------DSDEQVEDRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQ---IITGSWDRTAILWD
   WD 6  310-348    -GL------P--------------------LQPLTGHDHELTHVSAHPTQRL---VVTASRDTTFRLWD
   WD 7  349-390    FRE---AIPA--------------------VSVFQGHTETVTSSVFARDDK----VVSGSDDRTIKVWE
   WD 8  394-431    -MR------S--------------------ALATIRTDSSVNRLAVSTGG-I---IAIPHDNRQIRLFD
   WD 9  432-480    LNGQRVARLP--------------------RTSRQGHRRMVSSVAWAEEPLLDCDLFSCGFDRRVFGWS

   WD40 Template    TGE------C--------------------LRTLSGHTSGVTSVSFSPDGKR---LVSGSEDGTIKVWD