Input parameters:

  Query = FBpp0081664 (Len=499)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081664, Len=499):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAININGAKKPASNGEASWCFSQIKGALDDDVTD 80  
WD40-rpts                                      (________________WD 1_______________) (_________

Query       81 ADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQQKNP 160 
WD40-rpts      ________WD 2________________)                                  (______________WD

Query      161 VHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNS 240 
WD40-rpts       3_____________)(__________________WD 4_________________) (_________________WD 5

Query      241 DQETFLSADDLRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDMRSAALCDRHSK 320 
WD40-rpts      ________________)            (_________________WD 6________________)            

Query      321 QFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE 400 
WD40-rpts      (____________________WD 7___________________)           (_____________________WD

Query      401 CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAWHPE 480 
WD40-rpts       8____________________)  (_________________WD 9________________)                

Query      481 ENIIAVAATNNLFIFQDKF 499 
WD40-rpts                         

9 WD40-repeats found in QUERY=FBpp0081664 (Len=499):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    33-69       5.25  331.41  0.00213        2.5%     13.81
  WD 2:  Seg  4    71-109      7.84  438.64  7.6e-05       22.5%     39.89
  WD 3:  Seg  8   144-176      3.22  247.60  0.02831       10.0%     40.95
  WD 4:  Seg 11   177-217      4.76  311.40  0.00395       12.5%     17.92
  WD 5:  Seg 14   219-257      8.05  447.06  5.9e-05       22.5%     51.25
  WD 6:  Seg 19   270-308      6.46  381.71  0.00045       25.0%     40.06
  WD 7:  Seg 22   321-365      6.35  377.11  0.00051       30.0%     37.99
  WD 8:  Seg 26   377-423      5.32  334.59  0.00193       12.5%     42.56
  WD 9:  Seg 29   426-464      4.97  320.02  0.00303       12.5%     25.07

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-69     ----------MRQSSIT-KIGNMLNTAINI--NGAKKPASNGEASWCFSQ
   WD 2   71-109    KG--------ALDDDVT-DADIISCVEFNH--DGELLATGDKGGRVVIFQ
   WD 3  144-176    ----------------E-IEEKINKIRWLQQKNPVHFLLSTNDKTVKLWK
   WD 4  177-217    VSE-------RDKSFGGYNTKEENGLIRDP--QNVTALRVPSVKQIPLLV
   WD 5  219-257    ASP-------RRTFANA-HTYHINSISVNS--DQETFLS-ADDLRINLWH
   WD 6  270-308    IKP---------TNMEE-LTEVITAAEFHP-TECNVFVYSSSKGTIRLCD
   WD 7  321-365    QFE-EPENPTNRSFFSE-IISSISDVKLSN--SGRYMISRD-YLSIKVWD
   WD 8  377-423    PVHEYLRAKLCSLYEND-CIFDKFECCWNG--KDSSIMTGSYNNFFRVFD
   WD 9  426-464    -SK-------KDVTLEA-SRDIIKPKTVLK--PRKVCTGGKRKKDEISVD

   WD40 Template    TGE-------CLRTLSG-HTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD