Input parameters:

  Query = FBpp0081504 (Len=469)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081504, Len=469):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQAVKTETPKEPNVVAAKANGGTAVNGKLEAQKRPRHVSGGVEEIIDPFCNPEKPQRISFHDVTSAAFLIRGGVERTPC 80  
WD40-rpts                                                                                      

Query       81 PKSTSSDLYGMELYLKKDFLQYTGSFKERGARYALLSLTEEQKRTGVISASLGNHAQALCYHGWKLNIPVTVVMPKAAPI 160 
WD40-rpts                                                  (___________________________________

Query      161 MKIQKCRNYKARVIVDGNDMGEAKSLAMRMSREEGLLYVNGYDHPHIMAGQGTIGLEILEQVPEPDAVVVPVGGGGLIAG 240 
WD40-rpts      __WD 1____________________________________)                                     

Query      241 IATAVKALSPKTKIIGVESEKCASFTRAMENDGPIHTPIKNTLADGLAVPKVGYNAYATAMPLIDRMVVVKEEWIAVAIL 320 
WD40-rpts                                                                                      

Query      321 RLVEEEKCVVEGAGGAGLAAILAGHLDELKGKKVVVLLCGGNIDTTVFGRCLERGLAAVGRLVKFNVEVSDRPGGINDLC 400 
WD40-rpts                                                                                      

Query      401 ALLVRVGVSIKDIMHERAWLRDVYTVEVKVVCETVDWTHSLQLKNELKKFYSKVQFSDVPLALSNDTDS 469 
WD40-rpts                                                                           

1 WD40-repeats found in QUERY=FBpp0081504 (Len=469):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   125-203      3.07  241.27  0.03434       20.0%     10.63

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  125-203    TGVISASLGNHAQALCYHGWKLNIPVTVVMPKAAPIMKIQKCRNYKARVIVDGNDMGEAKSLAMRMSREEGLLYVNGYD

   WD40 Template    TGECLRTLSG-------------HTSGVTSVSFSP---------DGKRLVSGSED-----------------GTIKVWD