Input parameters:

  Query = FBpp0081373 (Len=826)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0081373, Len=826):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADAYCLTNFIDFSLSLSLPLKHHNRIKYTCFDISDSYIIFGASSGSLYLFNRNGKFLLLIPNKHGAITSLSISANSKYV 80  
WD40-rpts      (_______________________WD 1_______________________)  (_________________WD 2____

Query       81 AFATQRSLICVYAVNLSAQATPQVIFTHLDQSVQVTCIHWTQDEKQFYYGDSRGQVSLVLLSSFIGHSLLFNMTVHPLLY 160 
WD40-rpts      ____________)        (_________________WD 3________________)                    

Query      161 LDSPIVQIDDFEYLLLVSNCTKCILCNTEYEDYKQIGNRPRDGAFGACFFVSPQESLQPSRIYCARPGSRVWEVDFEGEV 240 
WD40-rpts                                                                                      

Query      241 IQTHQFKTALATAPARIQRPGSGTDELDANAELLDYQPQNLQFAKVQRLNDDFLLAFTELGLYIFDIRRSAVVLWSNQFE 320 
WD40-rpts                                                                                      

Query      321 RIADCRSSGSEIFVFTQSGALYSVQLQTLQSHAVSLIQQSKLLPCANLLRQHVRYFADKAREDYELKQLNPLKQLLIERQ 400 
WD40-rpts                                                                                      

Query      401 EYELLNDISVIFDAITQCTGSALDTHSSGGSSATTERSLSGGSSSRAPPKGVYVLENAFCDNLKQPLKTGHFKDALLTVT 480 
WD40-rpts                                                                                      

Query      481 GKFGKNIIKYKFNIFAEEQQQLVRELIPASERSLPFKDIKARYESGSEDQEEEIVRRCKKPAPQVPHISPEEKTLYNLYL 560 
WD40-rpts                                                                                      

Query      561 IAKSAKFSRTQCVDRYRAVFDEYAAGELVNLLEKLAQVMVEHGDTPDQAQRNCYEMYFDYLDPEMIWEVDDATRDHIAAG 640 
WD40-rpts                                                                                      

Query      641 FVLLNTSQNAEIVKCEHCSFPLRFDTSCQYHELGAVLLRYFWSRGEQLKCFDVVQSVPALLDVLAKFYLAEQNLTKVVAI 720 
WD40-rpts                                                                                      

Query      721 VLNYGLPELLADVGKQLSVSAWGRCFEQFVELQRGGRLVCANCECISGVEQEQLGRHFFYNWNCFLNIALDHMSAGDTLA 800 
WD40-rpts                                                                                      

Query      801 LIFKWSSYIPNDAIDREFYSRCLLKG 826 
WD40-rpts                                

3 WD40-repeats found in QUERY=FBpp0081373 (Len=826):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-52       3.94  277.35  0.01134       12.5%     44.30
  WD 2:  Seg  4    55-93       5.96  360.75  0.00086       22.5%     56.74
  WD 3:  Seg  8   102-140      5.29  333.38  0.00200       17.5%     54.23

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-52     MADAYCLTNFIDFSLSLSLPLKHHNRIKYTCFDISDSYIIFGASSGSLYLFN
   WD 2   55-93     -GK------------FLLLIPNKHGAITSLSISANSKYVAFATQRSLICVYA
   WD 3  102-140    -PQ------------VIFTHLDQSVQVTCIHWTQDEKQFYYGDSRGQVSLVL

   WD40 Template    TGE------------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD