Input parameters:

  Query = FBpp0080788 (Len=1361)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080788, Len=1361):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNVCSSGQKKKKDKDSASEKSDDSPPYQEADQKDTLISADSSAGDGKRAPLAAVEALPEVTPLPESNGNQAQVQKQLST 80  
WD40-rpts                                                                                      

Query       81 GPGSKPGGAEKDSNSTTPQGAQAPSDVANANPGAGNLSVLQGKPPPGRKIERDKKIVVYILADNSTEYKKHKRVVHSLYK 160 
WD40-rpts                                                                                      

Query      161 HFKSKCQSRGFDFIIADVHDSEPETEPGNGNARKDFSRLQEAKRWTQTPLEAQGGHEEAANCLCEITRHSAGAYMIPVLF 240 
WD40-rpts                                                                                      

Query      241 LGATLGTPMLPLTIESQDFTSVLGTASEEERLLLEKWYTIDNSYQPMCHRLHAQQVDPYSSQVNGELNELLAVLLRLFSD 320 
WD40-rpts                                                                                      

Query      321 DVKDSYLTTVVEQEINNTVLMSQELAKRCIWIQTGSQVARPSENASPLELEVQRRLSHVYSGLKSQLSEKNLIRLLPTMS 400 
WD40-rpts                                                                                      

Query      401 ILDEELSAVIESLLDKTLAGIFEEHQQKNSIPYNTLGVDRVLLEELRLVGHYSKLLAQNSANFDIMNDVKRYIRDSTAQP 480 
WD40-rpts                                                                                      

Query      481 LVVSGARGSGKSVLVSKIMENVHRWKPEAQLILRYANLSARSSDLTSLLGSMANQMSVLETGHQCQVPHTLEGYSRVIRE 560 
WD40-rpts                                                                                      

Query      561 ILDRQQRFFVLIIDGVDELQRDELLDWLPQQLGSAKMILTVSELADEGEDVDGTEAGDSFDMLAALAQLGIPQRCFLRLR 640 
WD40-rpts                                                                                      

Query      641 QFTERQWHDILSSGGGDFYAANGALKLPDDWKTLHGKTPYHAKSLWWLAWLGHVAQPISEIGDISSRILQVLESKFATDQ 720 
WD40-rpts                                                                                      

Query      721 VELLLLIVRLSPWGIRESDCLGVFQKMTQLEAQVAFKVWSKFCWLMGPMLLGLKNIRIADKSFGRAVLARYAQKQWLVHE 800 
WD40-rpts                                                                                      

Query      801 ALRDYFDRQDSEFKGSQGANTYNYQKYLKLPYHHFCAVIEDNPAPHKIDILFNCFYFTDLQWIANKVHATGPEHLLNDIL 880 
WD40-rpts                                                                                      

Query      881 QAEWLAKSGGENCPTAYVHICFLKQFLEQYLHELSYDGQQFYTLMKYYLKTRFREAPELKDDEKIRSWWEYTNELEFAFL 960 
WD40-rpts                                                          (_________________WD 1______

Query      961 EILNADLDAENGNQAEQEKPSDDAVPSSVPVKGYDVLMNLPQPGCYVASMCTDRSEICIWDVKNCCRIRELQGIQQPTAM 1040
WD40-rpts      __________)(______________________WD 2______________________)(_________________W

Query     1041 CPVGNYEAAVLCRREIRVINLDEGKFKVTLKGVMNQKMPYFGLHDQNHLVCLSRNRMYVNLMNLESGDCVTTFKAGEDRF 1120
WD40-rpts      D 3________________)   (_________________WD 4_________________)   (_____________

Query     1121 LNSLLVSGDGRILVCGDETQKPFPLLVWHLSQRKLLYDLRIPHHDFITSLSAITHEGSYVCVVAKELNEPTTPNFIVVYD 1200
WD40-rpts      ______WD 5__________________)(_______________________WD 6______________________)

Query     1201 LQSGTLFKKWKPACNTVSLAISQVNACVIAGLEDAKILIWDLVTGNCKSTLIGHNAPVTFLKLDPLGKVLLSYDKEGRDS 1280
WD40-rpts         (________________WD 7________________)   (__________________WD 8_____________

Query     1281 AVRMWELNSAKSLAVFKPPAQVSTCEILPNGAFVVLALKDRNSLLTLALKNYGGGSGALDDDCGTLYGNPDNQHKVFDLS 1360
WD40-rpts      _____)   (________________WD 9________________)                                 

Query     1361 N 1361
WD40-rpts       

9 WD40-repeats found in QUERY=FBpp0080788 (Len=1361):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   933-971      4.72  309.55  0.00419        2.5%     31.54
  WD 2:  Seg 14   972-1021     4.83  314.27  0.00362       15.0%     43.74
  WD 3:  Seg 17  1022-1060     5.30  333.79  0.00197       20.0%     44.21
  WD 4:  Seg 21  1064-1103     6.23  371.91  0.00061       20.0%     56.81
  WD 5:  Seg 25  1107-1149     6.44  380.59  0.00046       35.0%     51.14
  WD 6:  Seg 29  1150-1200     4.22  289.15  0.00787       25.0%     32.09
  WD 7:  Seg 33  1204-1241     7.09  407.36  0.00020       25.0%     54.19
  WD 8:  Seg 37  1245-1286     8.30  457.52  4.2e-05       37.5%     45.72
  WD 9:  Seg 41  1290-1327     5.45  339.77  0.00164       15.0%     52.09

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  933-971    -FR---------E--APEL-KDDEKIRSWWE-YTNEL-------EFAFL---EILNAD---LDAEN
   WD 2  972-1021   GNQAEQEKPSDDA--VPSS-VPVKGYDVLMN-LPQPG-------CYVAS---MCTDRS--EICIWD
   WD 3 1022-1060   VKN---------CCRIREL-QGI---QQPTA-MCPVG-------NYEAA---VLCRRE---IRVIN
   WD 4 1064-1103   -GK---------F--KVTL-KGVMNQKMPYF-GLHDQ-------NHLVC---LSRNRM--YVNLMN
   WD 5 1107-1149   -GD---------C--VTTFKAGEDRFLNSLL-VSGDG-------RILVC---GDETQKPFPLLVWH
   WD 6 1150-1200   LSQ------RKLL--YDLR-IPHHDFITSLSAITHEGSYVCVVAKELNE---PTTPNF---IVVYD
   WD 7 1204-1241   -GT---------L--FKKW-KPACNTV-SLA-ISQVN-------ACVIA---GLEDAK---ILIWD
   WD 8 1245-1286   -GN---------C--KSTL-IGHNAPVTFLK-LDPLG-------KVLLSYDKEGRDSA---VRMWE
   WD 9 1290-1327   -AK---------S--LAVF-KPPAQ-VSTCE-ILPNG-------AFVVL---ALKDRN---SLLTL

   WD40 Template    TGE---------C--LRTL-SGHTSGVTSVS-FSPDG-------KRLVS---GSEDGT---IKVWD