Input parameters:

  Query = FBpp0080522 (Len=1135)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080522, Len=1135):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAATVYQRLHSVAVGVGSAAGSAIGSGSASLPGSGTGSGSGIGHAGNTSSSTSSALLSHSQLTRSLERILEEAHFSGELI 80  
WD40-rpts                                                                                      

Query       81 LTNRKLKDFPRTGTKYSLTDTVIADLSRNRFAELPEEVTTFAFLETLLLYHNTIRSIPESVKQLSSLTYLDLRSNQLSSL 160 
WD40-rpts                                                                    (_________________

Query      161 PREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTDLDASYNQLANLPARLGELRSLRSLSLRSNHLLYLPRELTCLSLIS 240 
WD40-rpts      _______WD 1_______________________)                                             

Query      241 LDVSNNKIASLPLEIRHMSTLVELQLENNPLTSPPASLCMRGLVHVFKFLETQATKDEKGSRSGGNYDGYTTLRRAPRHN 320 
WD40-rpts                                                                                      

Query      321 SSGNVLEASTTGSTNNQRRHQVDSGYNTSDGLDKRWSHDAPTKSKTDSPLHCVSNSTAATLPRTLPSAVHSQADLMDASL 400 
WD40-rpts                                                                                      

Query      401 TSSTSTIVDESLTLSPTASPCKLSYAHSNSSSNGSSPDQDDDIMLDHQERTVHHANGRSGKGLGNIQTYKEYKEALKQQR 480 
WD40-rpts                                                                                      

Query      481 NQEISVYKQKHPNANHSPNDDEDLSPSPPSISNGSSSNTLPKSIMKQNSNQIGHNGNGNGSANGNGVDDVVIPKKPIQKV 560 
WD40-rpts                                                                                      

Query      561 IPSRITEIKPASTSDIRSANSSDCLGYVKPQSPMKNGTSKFNTSNGGGVQTTVGIVSSTTIKSPVSSTTKLGTVKTHRSV 640 
WD40-rpts                                                                                      

Query      641 TWNHDIPAEKLSFTMRREFDRQREETELMSQLRTIIETRLKMTLPVDIASALTDGVILCHLANYVRPRSVASIHVPSPGV 720 
WD40-rpts                                                                                      

Query      721 NKLTMARCRRNVDNFLEACRRIGVDEELICSCEDVVPQIEPQQPQLPRADDDYDADVYVQDDGSISRSNDSSHLQCSDDC 800 
WD40-rpts                                                                                      

Query      801 NSSSNHINRVPNALALLRTVSALIAMDENPYHQQLHHHLQLQLEQQHFEQEQFSEPTTCSQQQEQMLLLQQQQQQLEHVL 880 
WD40-rpts                                                                                      

Query      881 YENGLPRAENDDGVEDRDDDIGKRQQQLATVGQMLLKAKQKTYEKIKHNLLSAHGQHNFQGNNNNRMLHTIVENEHDVAA 960 
WD40-rpts                                                                                      

Query      961 AGPAGHYQIIDEKQEEDPYQPKSEDLKDAAALGNATKEAISKRIEFFEQQKSGKPKLEVFSIYLPKEKTKELELEQKIKA 1040
WD40-rpts                                                                                      

Query     1041 KTNEAGSSILKHDSHTLTVILSCVFIATFLWLNLICCAADVLEGKGAVQVAITVGELFRLHGNGGCGSGNSSGAATPTKS 1120
WD40-rpts                                                                                      

Query     1121 PTRTTRATMSPTPLA 1135
WD40-rpts                     

1 WD40-repeats found in QUERY=FBpp0080522 (Len=1135):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   143-195      2.92  235.28  0.04122       22.5%     -5.76

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  143-195    QLSSLTYLDLRSNQLSSLPREICFLPLQVLLVSNNRLTSLPDELGRLDQTLTD

   WD40 Template    TGECLRTLSGHTSGVTSVS----FSPDGKRLVSGSEDGTIK---------VWD