Input parameters:

  Query = FBpp0080041 (Len=1087)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0080041, Len=1087):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDATSQNSAATPMTRENIPLLNRQRNRWYLFSCWRKWFRPRELRARTVNLGRVNTEKFPPNEIRNQKYNFITFLPLVLF 80  
WD40-rpts                                                                                      

Query       81 EQFRFFLNLYFLLMALSQFIPDIRIGYPYTYWGPLGFVLMVTICREAVDDLRRHQRDHEVNSQKYKRLSSTNISGYEMVP 160 
WD40-rpts                                                                                      

Query      161 SSKLKVGDVIIVEKNERVPADLILLRTSDRSGSVFVRTDQLDGETDWKPRLAVPYTQKLSRDSELHSIDASFYVEKPQND 240 
WD40-rpts                                                                                      

Query      241 IHSFIATFCMADGSEDTGLSVENTLWANTVVAAGTATGIVIYTGCETRSVMNNSQPRSKVGLLDMEINGLTKVLFCAVLG 320 
WD40-rpts                                                                                      

Query      321 LSLVMMMLKGFGGPWYRYMFRFVLLFSYIIPISLRVNLDMGKAFYSWQMQNDSNIQGTVVRSTTIPEELGRISYVLTDKT 400 
WD40-rpts                                                                                      

Query      401 GTLTQNEMVFKKIHLGIVSHDADTFHHIGQMIQKLSGNILQQQQGSLSSSSSGGDSTKPMMFGNRMRRPEGWREWEAVRA 480 
WD40-rpts                                                                                      

Query      481 LALCHNVTPVSDDEDNRSVSTASTVTGGNNSPTKSVINIEAPGSTDTEHQYQAASPDEIALVKWTEQVGLTLIARDLNTM 560 
WD40-rpts                                                                                      

Query      561 TLQVKTPSEDNDILLHYQILQLFPFTSESKRMGIIVRESKTGQITFYLKGADVVMSSIVQYNDWLSEESGNMAREGLRTL 640 
WD40-rpts                                            (_________________________________________

Query      641 VVAKKVLTEEQYSDFETRYNAARLSITDRVAKVAAVTESLERELELLCLTGVEDRLQENVRPTLELLRNAGVRVWMLTGD 720 
WD40-rpts      _______________WD 1________________________________________________________)    

Query      721 KLETACCIAKSSQLIGRNQGLHVLRSVKTRTDAHQELNSFRRKQGHALVISGESLEVCLQYYRPEFLELATASPAVVCCR 800 
WD40-rpts                                                (_________________________________WD 2

Query      801 CSPTQKAQVVALIQKHTGKRTCAVGDGGNDVSMIQQADAGVGIEGREGRQASLAGDFSIPQFSHIAKLLLIHGRRSYKRS 880 
WD40-rpts      ________________________________)                                               

Query      881 AALSQFVIHRGLIITTLQAVFSAVFYLSSVALYQGFLMVGYSTLYTMFPVFSLVLDQDITSETAVTYPELYKDLSKGRSL 960 
WD40-rpts                                                                                      

Query      961 SYKTFFIWVLISIYQGGVIMYGALILFVDEFIHIVAISFSALIMTELIMVALTVRTWHRLMVLAELFSLALYLISLAVLH 1040
WD40-rpts                                                                                      

Query     1041 EYFDWEFIWSYDFLWKVSLITLVSCLPLYIIKFLRKKCSPPSYLKLS 1087
WD40-rpts                                                     

2 WD40-repeats found in QUERY=FBpp0080041 (Len=1087):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 22   599-716      2.94  236.29  0.03997       15.0%     27.47
  WD 2:  Seg 27   763-833      3.46  257.48  0.02091       20.0%     33.86

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  599-716    SKTGQITFYL-------------------KGADVVMSSIVQYNDWLSEESGNMAREGLRTLVVAK------------KVLTEEQYSDFETRYNAARLSITDRVAKVAAVTESLERELELLCLTGVEDRLQENVRPTLELLRNAGVRVWM
   WD 2  763-833    KQGHALVISGESLEVCLQYYRPEFLELATAS-----------P-------------AVVCCRCSPTQKAQVVALIQKHTGK---------------------------------------RTCAVG----DG-----------GNDVSM

   WD40 Template    TGECLRTLSG-------------------HT-----------S-------------GVTSVSFSP------------DGKR---------------------------------------LVSGSE----DG-----------TIKVWD