Input parameters:

  Query = FBpp0079907 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079907, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRRSTKSKPKSRAAYKYDTHVKENHGANIFGVA 80  
WD40-rpts                      (_________________WD 1_________________)      (_________________

Query       81 FNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQN 160 
WD40-rpts      __WD 2__________________)   (_____________________WD 3_____________________)   (

Query      161 EAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSL 240 
WD40-rpts      _________________WD 4_________________)(____________________WD 5________________

Query      241 KLWCLNTPEFHHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVLSKSCENAIVCWKPGQLHQSF 320 
WD40-rpts      ___)_______________WD 6________________)______________WD 7_____________)        

Query      321 EQVKPSDSSCTIIAEFEYDECEIWFVRFGFNPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR 400 
WD40-rpts                       (______________WD 8_____________)       (__________________WD 9

Query      401 DASVLVYVCDDATVWRWNRRQTTSI 425 
WD40-rpts      _________________)       

9 WD40-repeats found in QUERY=FBpp0079907 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-56       6.73  392.67  0.00032       20.0%     41.82
  WD 2:  Seg  5    63-105      6.41  379.33  0.00048       12.5%     48.73
  WD 3:  Seg  8   109-156      6.22  371.79  0.00061       17.5%     51.56
  WD 4:  Seg 12   160-199      8.46  464.03  3.5e-05       30.0%     56.19
  WD 5:  Seg 16   200-244      8.61  470.30  2.9e-05       32.5%     47.37
  WD 6:  Seg 19   242-280      7.01  404.08  0.00022       20.0%     10.55
  WD 7:  Seg 22   280-312      5.39  337.16  0.00178       22.5%     42.75
  WD 8:  Seg 27   338-370      5.61  346.20  0.00134       22.5%     43.18
  WD 9:  Seg 30   378-418      7.60  428.65  0.00010       32.5%     56.92

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-56     ESC-----GDESASYTT---------N--STTSRSKSP----SS-STRSKRRGRRSTKSKP
   WD 2   63-105    -KY-----DTHVKENHG---------A--NIFGVAFNTLLGKDE-PQVFATAGSNRVTVYE
   WD 3  109-156    -QG-----GMQLLHCYADPDPDEVFYT--CAWSYDLKT----SS-PLLAAAGYRGVIRVID
   WD 4  160-199    -NE-----AVGNYIGHG---------Q--AINELKFHP----HKLQLLLSGSKDHAIRLWN
   WD 5  200-244    IQSHVCIAILGGVEGHR---------D--EVLSIDFNM----RG-DRIVSSGMDHSLKLWC
   WD 6  242-280    -LW-----CLNTPEFHH---------K--IELSNTFSQ----EK-STLPFPTVTKHFPDFS
   WD 7  280-312    S----------TRDIHR---------N--YVDCVQWF------G-NFVLSKSCENAIVCWK
   WD 8  338-370    YDE-----C-------E---------I--WFVRFGFNP----WQ-KVIALGNQQGKVYVWE
   WD 9  378-418    -GA-----HMTTLHNSR---------SVATVRQIAFSR----DA-SVLVYVCDDATVWRWN

   WD40 Template    TGE-----CLRTLSGHT---------S--GVTSVSFSP----DG-KRLVSGSEDGTIKVWD