WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0079896 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0079896 (Len=1953) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0079896, Len=1953): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MGDSEQIWPEIGVDPQHVCEAGGDGRFQVICDKAWLQSLERNRRLTHFPSWPLLDRRSYPIGQLEHPWTRILVQTYRKQP 80
WD40-rpts
Query 81 QSRVYPLPRISGDAPSSELPLSYSQAVSFVAHSNFKQLWEEAYRKYNGAHVRMCRSTPSAPSTKPPSGQGQLQPHDVVLK 160
WD40-rpts
Query 161 ELIQRVYRCPVLHCQLDRDGVSDSSNATSCSAGSCHANVLPALVAIETSTHISVFFYPPALECSLYDCITFSPALLGKNY 240
WD40-rpts
Query 241 NKTLFVIYQILQLAKHLQGQGLFLGDLRLQDIVLRENLWLQVLPRLQCNLLDDDPAGEDMSPLTPLVSEDLGEAREAQQA 320
WD40-rpts
Query 321 LPSSSTMFDLRFAYDPAHFNLREYTEMWCNGQLSNFDYLTILNNACGRSLTNAAYHHIMPWVTDFSGRGGGAWRDLTKSK 400
WD40-rpts
Query 401 YRLNKGDVHLDLMYAHASQHGSADGSYQAIGDQAPHHVSDFLSEITYFVYMARRTPQSILCAHVRPIWVPAEYPVSIQRL 480
WD40-rpts
Query 481 QEWTPDECIPEFYSDPMIFKSIHEDLPDLELPAWATCPEDFICKHREALESQYVSERLHHWIDLNFGYKLSGKAAVKSKN 560
WD40-rpts
Query 561 VCLTLVDQHRNLSQRGIVQLFASAHPPRRYATPWFSRTAPRLSQLYASPAKRLAKSTENLQAESATGSSHLSLRLGDDGS 640
WD40-rpts
Query 641 SGSVHSSSASASASNFYAITNFIELPENYNPALLLHNLETLEAFYARTFPQQRASANPEEKMISSDLMFEQNSAEHSFTN 720
WD40-rpts
Query 721 QLFASGDELPPKSKNLLREKRNCLQHLLNVRKERDLHVLGCLIIELFAMQRLRPLLMGNGLTATFDSRLSACRTVAQLHR 800
WD40-rpts
Query 801 QELPKPVRRVVRLLLQLEQPGEEDQGLPQPPNPAQLLEPMFSNLLLPFPSHYMAVYALVRSLHAFEANAVLLELQTHFSC 880
WD40-rpts
Query 881 KGGRECERYTEMDRQRVLFERKIAECKVMSCCAHVKRLLEPMSFAYEQFTPVELLLPHIIDLLRDERTSILTAWNLFDPI 960
WD40-rpts
Query 961 AQALGVSQTQQHLLQPLLKLYDVESVSSPDDGGSNGSTNSGGHLRFSASSSFKSRKSVKLYHHSFLLRLIVRFGLRCFLH 1040
WD40-rpts
Query 1041 HFIAPLIEAVGGYKEPEQGNGYHYHSGGSRRTSKNLNFASENEVHQTEVAPEMKPDIEELFTFEDDHDRASTQDSKSIDS 1120
WD40-rpts
Query 1121 FDMRPSTSAASAEEARESDGSPDKLVINELIYGARISPDKLSLKESQTPPALVPPPIGPRSPTIEIPMGPTAGGIRRSFQ 1200
WD40-rpts
Query 1201 LSAIDCDIGSRKSVDSFDLISQAVEQLPPPAEESEAEASDSLQASVISRLSEAKAVQNNRISEMSAESLVWLSHRLGPVL 1280
WD40-rpts
Query 1281 TSRFITRNLLKLLSLCYVGQENLLPEVDDGGSSFNSSPDAANLNYFSIANARVVGDRSAARVLECLMSIAALYGENFLLL 1360
WD40-rpts
Query 1361 QYFPHISELISLCSKRITGSLEGAIISSLQLLKYMVPCLTDASIMEHLQHIMLDAILLPILRLLSSTNLVMPSGYLGRSL 1440
WD40-rpts
Query 1441 LARKFLDAIYALSVRLGSDMTREHLCQPLLNPFFLIFNKAFGLPNDFACDLANLSLVGGASQPERALEELRDVFGPELAH 1520
WD40-rpts
Query 1521 TAYLTFLRFLGEANMKRTLSNLDFVLTLCHEHEQPNGQSKIQLATNVSSGQDVDSVDASCELAANSFGTQIVGNRLQVAR 1600
WD40-rpts (_________________WD 1________________)_____
Query 1601 NNVELIDMVAYKLDQMPKTRHLKGNWLAYWRNETTRNEKDTQTLNLKQIRLQSFVGHTNSVRAIYALDNENSFISASKDK 1680
WD40-rpts ______________WD 2_____________________) (_______________WD 3_________
Query 1681 TVKLWSLRSEGDGRKTSACQFTYTAHKKSINSLGFLESLRYVVSCDSGIHLWDPFIGRPLSVLDAPRHSAVTVVKCLPSH 1760
WD40-rpts _____) (________________WD 4_______________) (__________________WD 5_
Query 1761 SPLVIAGTAESTVKMVDARSCEYVNEWRVCNASLPNATVRCLAVAPSGNWLAAGLSSGCIVQLDTRTGMVINSWRPMECD 1840
WD40-rpts ________________)(_____________________WD 6____________________) (____________
Query 1841 LLQLAAPSDQFLVSSALDHSLAVWHALDGIMHYQLKPPPEPAHFLQSVGPSLVYATTGNRVGVYADVAHSHAFSTITKLR 1920
WD40-rpts ____WD 7________________)(_________________WD 8_________________)(______________
Query 1921 SETFRGVLTSLAVLPLNRAFLAGNESGNIALLC 1953
WD40-rpts _______WD 9_____________________)
 9 WD40-repeats found in QUERY=FBpp0079896 (Len=1953): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 16 1557-1595 3.34 252.68 0.02422 17.5% 41.49 WD 2: Seg 19 1593-1640 3.72 268.25 0.01501 20.0% 43.23 WD 3: Seg 22 1652-1686 7.79 436.32 8.2e-05 25.0% 48.96 WD 4: Seg 25 1697-1733 5.59 345.41 0.00138 27.5% 39.71 WD 5: Seg 28 1737-1777 5.08 324.66 0.00262 20.0% 54.05 WD 6: Seg 32 1778-1824 6.47 382.06 0.00044 25.0% 45.84 WD 7: Seg 36 1828-1865 6.04 364.13 0.00077 20.0% 55.39 WD 8: Seg 40 1866-1905 3.43 256.41 0.02160 10.0% 40.31 WD 9: Seg 44 1906-1953 5.00 321.02 0.00293 20.0% 45.73Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1557-1595 -GQS-------KIQLA--------T--NVSSGQDVDSVDA---------SCELAANSFGTQIVGNR WD 2 1593-1640 -GNR-------LQVAR--------N--NVELIDMVAYKLDQMPKTRHLKGNWLAYWRNETTRNEKD WD 3 1652-1686 ------------QSFV--------G--HTNSVRAIYALDN---------ENSFISASKDKTVKLWS WD 4 1697-1733 -SAC-------QFTYT--------A--HKKSINSLGFLES---------LRYVVSC--DSGIHLWD WD 5 1737-1777 -GRP-------LSVLD--------APRHSAVTVVKCLPSH---------SPLVIAGTAESTVKMVD WD 6 1778-1824 ARSCEYVNEWRVCNAS--------L--PNATVRCLAVAPS---------GNWLAAGLSSGCIVQLD WD 7 1828-1865 -GMV-------INSWR--------P--MECDLLQLA-APS---------DQFLVSSALDHSLAVWH WD 8 1866-1905 ALDG-------IMHYQ--------L--KPPPEPAHFLQSV---------GPSLVYATTGNRVGVYA WD 9 1906-1953 DVAH-------SHAFSTITKLRSET--FRGVLTSLAVLPL---------NRAFLAGNESGNIALLC WD40 Template TGEC-------LRTLS--------G--HTSGVTSVSFSPD---------GKRLVSGSEDGTIKVWD |
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