Input parameters:

  Query = FBpp0079785 (Len=969)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0079785, Len=969):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPTETLRPGERGTAGGPGAGAPEQTYIVRQSNKYYEHRDSQATAMSVDYSGQWVLLAGRGHLALQRLGQDDGSLRRHER 80  
WD40-rpts                                    (_________________WD 1_________________)(_________

Query       81 QSKYEVSVAEFAICPSRKEYCAIATSQHIDIVRWGTAEPHYEMSLRGHTRTVTDIDWHGKDPNLLVSCSIDTFSHIWDLR 160 
WD40-rpts      ___________WD 2___________________)   (_________________WD 3_________________)(_

Query      161 EPRKPALSLNAVCMSGATQVGFNRVSGNLLAAAHDGDLRIWDIRKGSCPTHYITAHLNRVHGINWSHKRETCLATASQDG 240 
WD40-rpts      __________________WD 4___________________)(___________________WD 5______________

Query      241 TVKYFDVCNPRRAEKIITTMSPVWRARYTPIGNGLVSIVVPHLGRGENSLLLWSNSKQTDPICSFVGHTDVILDFAWRPN 320 
WD40-rpts      _____)   (____________________WD 6___________________)    (___________________WD

Query      321 RESSNEIELVTWSRDRTLRVWKIDDNMLKLCEPSAEEIESRFEPDLSELRVPTPPEFLHPRSILVAASLPISTGDGACNT 400 
WD40-rpts       7___________________) (_________________WD 8________________)                  

Query      401 LPMARSPSFGGGYYRREEPHIARSLTDQPTCSLHHEFSLLNTNMPHVEVDTLDAIKRYACFKICAGGHTVILQVTFTTSY 480 
WD40-rpts                                                                       (______________

Query      481 PSPSAPPDFQLCQGTTLSSEVSGVLLKVLRCNALQRVKKSRTCLEQCLRALVAAMKKKVAAVGGADRSQLLLQSPRLEGA 560 
WD40-rpts      ________________________WD 9_____________________________________)              

Query      561 LSSTLHDACIPYPRTSGVHFNAIGMLTTFAQPVNNKRLTLRQHTALTPRTFSSINGSGLLGNVMATAQREANASFYLQER 640 
WD40-rpts                                                                                      

Query      641 MISGKPGKQRAIRQMNGSPVVHVYDTSSLLHISRRMAREFSLDKCNIAETCRKNGEICRQHGRLDLVPVWLLAELIATPQ 720 
WD40-rpts                                                                                      

Query      721 IPHETLNDLLFYKDPFKKSLLESLIMHYAISGDIQTAVLLACLFDKCPTGGGAIMEKTVRLPPQLNSQISPYHTVLPLDV 800 
WD40-rpts                                                                                      

Query      801 KSSSSSNTWQQLKQLRSNSWSDSLDLEIKQIQSDAYACSLIRRTKMPLFDQFKRAYAEILFGWQLLSKRALILKHTQNTP 880 
WD40-rpts                                                                                      

Query      881 PPVQGVEFVTECRKCAKPKRTPKCEPCKRPVLFCVLCRLPVKGAANACLACGHGGHIDHMMQWFEKHNVCATCGCKCLER 960 
WD40-rpts                                                                                      

Query      961 TSELLALLS 969 
WD40-rpts               

9 WD40-repeats found in QUERY=FBpp0079785 (Len=969):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    31-70       5.20  329.63  0.00225       10.0%     38.93
  WD 2:  Seg  5    71-115      3.73  268.89  0.01472       22.5%     42.82
  WD 3:  Seg  9   119-158      7.38  419.71  0.00014       35.0%     53.96
  WD 4:  Seg 13   159-202      7.25  414.01  0.00016       30.0%     50.84
  WD 5:  Seg 17   203-246      6.75  393.35  0.00031       25.0%     51.72
  WD 6:  Seg 21   250-294      5.17  328.29  0.00234       22.5%     44.59
  WD 7:  Seg 25   299-342      6.69  391.08  0.00033       27.5%     55.11
  WD 8:  Seg 28   344-382      4.06  282.25  0.00974       12.5%     35.56
  WD 9:  Seg 36   466-546      3.08  241.75  0.03385       20.0%     -4.31

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-70     QSN----KYY---EHRDSQATAMSVDYSG-QWV-----L-L--AG------RGHL----------------------AL-------------------QRLGQ
   WD 2   71-115    DDG----SLRRHERQSKYEVSVAEFAICP-SRK-----E-YCAIA------TSQH----------------------ID-------------------IVRWG
   WD 3  119-158    -PH----YEM---SLRGHTRTVTDIDWHGKDPN-----L-L--VS------CSID----------------------TF-------------------SHIWD
   WD 4  159-202    LREPRKPALS---LNAVCMSGATQVGFNR-VSG-----N-L--LA------AAHD----------------------GD-------------------LRIWD
   WD 5  203-246    IRK-GSCPTH---YITAHLNRVHGINWSH-KRE-----TCL--AT------ASQD----------------------GT-------------------VKYFD
   WD 6  250-294    -PR----RAE---KIITTMSPVWRARYTP-IGN-----G-L--VSIVVPHLGRGE----------------------NS-------------------LLLWS
   WD 7  299-342    -TD----PIC---SFVGHTDVILDFAWRP-NRESSNEIE-L--VT------WSRD----------------------RT-------------------LRVWK
   WD 8  344-382    -DD----NML---KLCEPSAEEIESRFEP-DLS-----E-L--RV------PTPP----------------------EF-------------------LHPRS
   WD 9  466-546    GGH----TVI---LQVTFTTSYPSPSAPP-DFQ-----L-C--QG------TTLSSEVSGVLLKVLRCNALQRVKKSRTCLEQCLRALVAAMKKKVAAVGGAD

   WD40 Template    TGE----CLR---TLSGHTSGVTSVSFSP-DGK-----R-L--VS------GSED----------------------GT-------------------IKVWD