WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0078775 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0078775 (Len=3489) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0078775, Len=3489): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MNVMRKLRGAASAGSVSGSSSGTSTANNSSPGSSRTDAGAPTAANGRNAEEALMDARVQVSLTTLKKLFNEYTHPREPLS 80
WD40-rpts
Query 81 EQERDDKLYEMLPLFCKVFSSCPSNDMSEKFWDVVAFCQQVSRLMVSEIRKRASNQSTEAASIAIVKFLEVETTEETSSG 160
WD40-rpts
Query 161 WMLLATLNLLANGDVSLIQVMTAAAVPSTLVKCLYLFFDLPIVEDDEPSADGGAVSEFNAHERRTLLQKVFVQLLVKLCS 240
WD40-rpts
Query 241 YPYPAEELARMDDLTLLFSAITSPCPIHNIVWRKNAAEILTTISRNGLTDAVVSYIHSKGCMALCVDNMQRLTFGNPLEI 320
WD40-rpts
Query 321 VEMFVTVFCFLKDSSQVSQILMDDFRASQGYVFLSDFLLKFDNNRSQSLEIQAAIRNLVLMISSLCMCGFYELRPPASQF 400
WD40-rpts
Query 401 NTAFKLQNFQLPQATSRETCVRNVYAFQVLQNVFLKSTTPALCCTILDAISRVYHSENANYFILESEQTLSSFAERIHMK 480
WD40-rpts
Query 481 SPQIQEKFYDLLEFIVFQLNFVPCKELISLSLLLKHNQSTSCSILCLKTLLNILRHNAVFKDVYREVGILEIFVGCLTRY 560
WD40-rpts
Query 561 AAHVQKITKGDESVVVELENESEEELFDTLGKHVLEALTMLLGGGASNNAQLFREYGGAKCVHELVKFKHCRPQALGIVR 640
WD40-rpts
Query 641 ELILSAGGDDDMLHILSLMHSVSPLQVEFKIQILNMLLGCLKDSHRTRTVFRKVGGFVYVTSVFVSLDGSMALPQPDIPQ 720
WD40-rpts
Query 721 QDLILLLQIVFQTLATAMRFEPANAKFFHQEISSSSLCDTLRLLGCFGGSSALQDYTGTYEPQQSLLKYYHEIFSGDILS 800
WD40-rpts
Query 801 VSFSEDVPYPLSYVCIVFRLLYSIALDNFEAPNLSGIITLFSDPPTTLRSPSKELAPPVHPSQLNLTQPSPEPRIVHPGV 880
WD40-rpts
Query 881 VLCMLQLLPAVEYDMAPLQAVQLQVYLSEIIKSLVRSERNQQIMCDHGLAEKLLKLTRRALAEESHPLHVPMQYILERLA 960
WD40-rpts
Query 961 AQALQPTELRQFLRLGEPLSCADIDLQQPYKLGGPVPLTRIKTLVSMTTPRDFRAHGSSTLPPFVELDMSAEGFGCLYLP 1040
WD40-rpts
Query 1041 SLAPQATATAGGTIDANSIGGIGAGDRIFPPQTGLTYSTWFCVEKFSDPKTDPHCVRLLTLVRTIHNPREENLACLSILL 1120
WD40-rpts
Query 1121 SARDKAIVVSTQETLVTPRKSIGDWEPEGSDDGIARIWCPDLLHEGQWHNLVVVLNRAVLKNSSLFLYLDGVPMHTQKLH 1200
WD40-rpts
Query 1201 YIAQHPAAGNASLTSPTQIFGYIGTPPIWRRYSRLCWKQGVCHLIEDVLTQQTVQTIYQLGPHYMGSLQAPQLGKQSESL 1280
WD40-rpts
Query 1281 APLVPEDRVLLGLNAKAVSKLTLVKIRKVYSRADNKSIAKQLNMNSHENATPIKILHNSAGHLAGAGRSLGGVVVGYLGV 1360
WD40-rpts
Query 1361 RVFSPHPVSAMIDTVGGCNVLLGIIAMAQDVESLYAGVKALTCVVRSNRAAQAEMDRKRCYQTLGMFFKKKKHLLNSHIL 1440
WD40-rpts
Query 1441 HLTFGLVGTVNSGQDMSAIPNVTAFQDLLCDLEIWHNAPNGLLRSLLEHLLELVVESSDKKQNVKIMRDLQLLVKLLHII 1520
WD40-rpts
Query 1521 TQIQDHSTREILFSLLETLLGGQPRHTDLLLFGQYVAAKLPHAHSGGLERAVLLPSMKNPAEDQDGGVAQNIYLRNRCLS 1600
WD40-rpts
Query 1601 LLHGLLFTPRNTVNYVICDDISKTLGMDWLLLFMQPHVHFTTVIIAVRILVVICANESFLVRFRDATHNGGYLRFTEMVS 1680
WD40-rpts
Query 1681 QRKMLGLGAQQLNQRPTNGTGTVIVATPQNTIQHLPTQIAGEVRAAALNIPGFQLLEWLMNHHLDVPELYFLITALIMGQ 1760
WD40-rpts
Query 1761 PVKVLATEHTKFDLDRVWSFLWGAPVSANTQLPKLNICPEGVCVLLAMVRGIVHGGECAPWLHSHPETIIQLLFSLYQNL 1840
WD40-rpts
Query 1841 TDFAPVMMTGDVVTSLVAVLFPLASRPADSEPNSGASTPTDDTGSSFALPPPETLHGAPQPKLTAHPVCNCIIDFLRVIV 1920
WD40-rpts
Query 1921 VDSLGLNMQGKPTPVIDLVLDAAPESAELPLQVQYQTQIIIALMDHLLAADVLVGEQAALPLVPLLQSQMQYIAPNVFYL 2000
WD40-rpts
Query 2001 TARIVDKLWQGCLARNPHDIFDFVIKLIVQAKRRSSSLSLEHLHHSLNRSILFLLSRPTDDSRADQMSVLEALHKIIQHR 2080
WD40-rpts
Query 2081 LLIFGAGNHELEFIGCLTYCLLQLTADMKIILEPATSRNTTWHVNPQTETAEPKDEDLNQLQGRNLIVGAAFRVWEELYV 2160
WD40-rpts
Query 2161 CKKPAIEEVFKVSLTSPPPNSKAPDLQTTREQVMELASKLWFNYVEAERKATYRAPWELHTQIQSKIQKVTGGLSRLTSR 2240
WD40-rpts
Query 2241 TKTKKEELVRTRSTLTREAAYESTGIHVQLIKDLLDLRAKQYQQMLQHTQRYVYQDWVQSEMELTRERGLWGPTGSCSLD 2320
WD40-rpts
Query 2321 KWILDTTEGPHRMRKKTMRNDVFYLHYPYRPELELADNRQLKYKVASSLDSKTYALHGPQQPRILAEAGEHHAMQQQSSL 2400
WD40-rpts
Query 2401 EAVQSHRLETSSSTSTPPPMVLPKLVGHGSTPCPQESVDGNAPEDDEEEEDTSMTSDNETFLRLLEEQEKISFMFRCARV 2480
WD40-rpts
Query 2481 QGLDTFEGLLLFGKEHCYIVDGFTLLKNREIRDIDTLPPGAYEPIIPNSGGTSSTTSRAVSHKLRQCSKFAYEEIREVHK 2560
WD40-rpts
Query 2561 RRYLLQPIALEVFSEDGRNYLLSFPRKVRNKVNQRFLALATALNDNAQQSVAGQKRTASVEQTAGIFSGLIGETSVTQRW 2640
WD40-rpts
Query 2641 VRGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEELDLTNPKTFRDFSRPMGAQAEERLEQFQKRFKEWDDPH 2720
WD40-rpts
Query 2721 GETPPYHYGTHYSSAMIVCSYLVRLEPFSQPFLKLQGGHFDLADRMFHSIKEAWLSASKLNMADVKELIPEFFYLPEFLS 2800
WD40-rpts
Query 2801 NFNNFDLGTKQNGETLNHVILPPWAKHDPREFIRLHRSALECDYVSQHLHLWIDLIFGCKQQGPAAVDAVNVFHHLFYEG 2880
WD40-rpts
Query 2881 NVDIYNIDDPLKKNATIGFINNFGQIPKQLFKKAHPAKKMGGSRHSALIDPTSLIQGNSTVLQTDRLFFHNLDNLKPSLQ 2960
WD40-rpts
Query 2961 PIKELKGPVGQILQPDKTVFAVEQNKVMMPPSYTKYIAWGFADHSLRIGLYDTDRASFVSEASAQNSGEILTCACPNAKM 3040
WD40-rpts (__________________WD 1_____
Query 3041 IVTAGTSSVVTIWKFDANRKSLAVKHSLHGHTDAVTCLAASAAYNVIVSGSRDGTAIVWDMTRFTFVRQLRGHAGVVAAV 3120
WD40-rpts _____________) (____________________WD 2___________________)
Query 3121 SINELTGDIATCSATWLHVWSINGDALAMVNTCVGSADRMQQILCVAFSQIREWDQQNVIITGSTDGVVRMWSLEHTQVP 3200
WD40-rpts (_________________WD 3________________)
Query 3201 IDRKLKRGTEVSSQDKPDTVSLEGKDNKDDKMSLMKQIKSLSQSEEEMEIVKSASESSISEASQHSHGSSKSAEAGPKAE 3280
WD40-rpts
Query 3281 VQGERRKSSISGAKSLHEMKSATVEGQGSSYDPKSNEDEHAIRPSKSDTSLTDGFVVIDNDRHKGDQILRKGFRWQRQLM 3360
WD40-rpts
Query 3361 FRSKLTMHTAYDRKDNAEPASITALTVSKDHKILYVGDARGRIFSWSVTEQPGRGVADHWLKDEGADQCVKCHVKFTLYE 3440
WD40-rpts (___________________WD 4___________________)
Query 3441 RKHHCRNCGQVFCNKCSRFESEISRLRILKPVRVCQACYSQLRTNSLDN 3489
WD40-rpts
 4 WD40-repeats found in QUERY=FBpp0078775 (Len=3489): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 27 3013-3054 4.20 287.99 0.00816 20.0% 53.61 WD 2: Seg 31 3056-3100 6.86 397.83 0.00027 42.5% 57.90 WD 3: Seg 40 3155-3193 2.85 232.23 0.04521 17.5% 22.35 WD 4: Seg 52 3364-3407 4.47 299.24 0.00576 25.0% 36.46Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3013-3054 TD-----RASFV----SEASAQNSGEILTCACPNAKMIVTAGTSSVVTIWK WD 2 3056-3100 DANRKSLAV--K----HSLHGHTDAVTCLAASAAYNVIVSGSRDGTAIVWD WD 3 3155-3193 -G-----SA--D----RMQQILCVAFSQIREWDQQNVIITGSTDGVVRMWS WD 4 3364-3407 KL-----TM--HTAYDRKDNAEPASITALTVSKDHKILYVGDARGRIFSWS WD40 Template TG-----EC--L----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |