Input parameters:

  Query = FBpp0078185 (Len=1034)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078185, Len=1034):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKNHNKYVKLPQDLDLSFHSDLDLLPDTAADIDVELDPAADTDVAALSVNVPASLGLDEDDDDEVIIAPGGGGLRLAPTA 80  
WD40-rpts                                                                                      

Query       81 AEAVAAHRQHHQQHQQCKQLKNQLEQKQILPKSKICGLGSDSIVETGLTLTPEMLLSTSESSTHSASEVAGRLQVDVRTG 160 
WD40-rpts                                                                                      

Query      161 LKWTEAKYRAKIIGHNELLLVAEDPTWKKYIEQFRNPLILLLLGSALVSVIMKQFDDAVSITIAILIVVTVAFIQEYRSE 240 
WD40-rpts                                                                                      

Query      241 KSLEELKKLVPPECHCLREGRLDTFLARELVPGDIVHLNVGDRVPADVRLFEAVDLSIDESSFTGETEPARKITDVLLNN 320 
WD40-rpts                                                                                      

Query      321 TNVKDHSNMKNIAFMGTLVRCGNGKGIVVSTGERSEFGEVFKMMQAEEAPKTPLQKSMDILGAQLSFYSFLIIGVIMLLG 400 
WD40-rpts                                                                                      

Query      401 WLQGKPLSEMFNISVSLAVAAIPEGLPIVVTVTLALGVMRMAKRNSIVKKLPTVETLGCVNVICSDKTGTLTKNEMTATI 480 
WD40-rpts                                                                                      

Query      481 IITSDGYMADVTGAGYNDQGEIHIRHCNNVEMAKTNITNLLEIGAVCNNAYIQNGTLLGQPTEGALVAVAMKNGMYATAE 560 
WD40-rpts                                                                                      

Query      561 NYVRIQEYPFSSEQKMMAVKCIHKYNNNKEEIFFAKGALETLLPQCTKYQFGTQTVPLTKQNEAEFLAEAYEIGRKGLRV 640 
WD40-rpts                                                                                      

Query      641 LALAKGRSMQDLIYCGLVGITDPPRPLVRESIEMLMQSGVRVKMVTGDAQETALAIANLIGIDTIHHQTLSGQEMDQMNE 720 
WD40-rpts                                           (__________________________________________

Query      721 HQLDKVANNVSVFYRVSPRHKLEIVKSLQRSGNIVGMTGDGVNDGVALKKADIGIAMGKNGTDVCKEAADMILVNDDFHT 800 
WD40-rpts      ____WD 1______________________________________________)                         

Query      801 IIAAIEEGKGIFYNIRNFVRFQLSTSIAALALIALATLMDIANPLNAMQILWINIIMDGPPAQSLGVEPVDHDVLKQKPR 880 
WD40-rpts                                                                                      

Query      881 NVKQPMITKSVVVNVLLSASIIVLGTLWVFQREMADGTLGKTKRDTTMTFTCFVFFDMFNALSCRSQTKSVFTIGLTTNR 960 
WD40-rpts                                                                                      

Query      961 MFLLAVAFSIIGQMLVVYFPPLQMVFQTEALTPYDIFFLVSLTSSVLVVSEIKKWFERTMERKMYSTRSELDFV 1034
WD40-rpts                                                                                

1 WD40-repeats found in QUERY=FBpp0078185 (Len=1034):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   678-775      3.17  245.54  0.03014       20.0%     20.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  678-775    SGVRVKMVTGDAQETALAIANLIGIDTIHHQTLSGQEMDQMNEHQLDKVANNVSVFYRVSPRHKLEIVKSLQRSGNIVGMTGDGVNDGVALKKADIGI

   WD40 Template    TGECLRTLSGHT-----------------SGVTS------VS----------------FSPD-----------GKRLVSGSEDGTI--------KVWD